c372ad07936e4eb413fc8ca45f389535bbbfa82d max Thu Jan 27 06:53:09 2022 -0800 updating primer3 URL, no redmine, email to QA diff --git src/hg/hgTracks/extTools.ra src/hg/hgTracks/extTools.ra index 2597345..d623dc6 100644 --- src/hg/hgTracks/extTools.ra +++ src/hg/hgTracks/extTools.ra @@ -63,36 +63,40 @@ tool ensemblMm9 shortLabel Ensembl longLabel Ensembl Genome Browser url http://may2012.archive.ensembl.org/$n/contigview email helpdesk@ensembl.org onlyDbs mm9 isHttpGet true param chr $s param start $start1 param end $] tool primer3Plus shortLabel Primer3Plus longLabel Updated interface of the popular primer designer. Primers flank the nucleotide in the center of the screen. -url http://primer3plus.com/cgi-bin/dev/primer3plus.cgi -email server@untergasser.de + +tool primer3Plus +shortLabel Primer3Plus +longLabel Updated interface of the popular primer designer. Primers flank the nucleotide in the center of the screen. +url https://dev.primer3plus.com/primer3plus/api/v1/upload +email server@untergasser.de <mailto:server@untergasser.de> maxSize 10000 -param GENBRO_RETURN_PATH $returnUrl -param GENBRO_DB $db -param GENBRO_POSITION $position +param P3P_GB_RETURN_PATH $returnUrl +param P3P_GB_DB $db +param P3P_GB_POSITION $position param SEQUENCE_TEMPLATE $seq tool primerBlast shortLabel Primer-BLAST longLabel Primer3-based primer designer that also checks matches via NCBI BLAST url https://www.ncbi.nlm.nih.gov/tools/primer-blast/primertool.cgi email info@ncbi.nlm.nih.gov maxSize 50000 param EXCLUDED_REGIONS param PRIMER_INTERNAL_OLIGO_MAX_GC 80.0 param LOW_COMPLEXITY_FILTER on param SELF_ANY 8.00 param SALT_FORMULAR 1 param PRIMER_INTERNAL_OLIGO_OPT_TM 60.0 param PRIMER_INTERNAL_OLIGO_MIN_SIZE 18