4654fecc7b9d5d905365bd72fee9d3fa4cb6724f
chmalee
  Thu Jan 13 12:38:46 2022 -0800
Staging updates to clingen tracks: slightly rework the otto job after changes to the clinGen website, get out links on description pages correct, refs #28453

diff --git src/hg/utils/otto/clinGen/clinGenDosageTriplo.as src/hg/utils/otto/clinGen/clinGenDosageTriplo.as
index 5097e0e..310f1c5 100644
--- src/hg/utils/otto/clinGen/clinGenDosageTriplo.as
+++ src/hg/utils/otto/clinGen/clinGenDosageTriplo.as
@@ -1,29 +1,30 @@
 table clinGenCnv
-"Dosage Sensitivity scores from Clinical Genome Resource bed9+16"
+"Dosage Sensitivity scores from Clinical Genome Resource"
     (
     string chrom;      "Reference sequence chromosome or scaffold"
     uint   chromStart; "Start position in chromosome"
     uint   chromEnd;   "End position in chromosome"
     string name;       "Short Name of item"
     uint   score;      "Score from 0-1000"
     char[1] strand;    "+ or -"
     uint thickStart;   "Start of where display should be thick (start codon)"
     uint thickEnd;     "End of where display should be thick (stop codon)"
     uint reserved;     "Used as itemRgb as of 2004-11-22"
     string url;       "ClinGen URL"
     string geneSymbol; "Gene Symbol or ISCA Region Name"
     string geneId;     "Gene ID or ISCA ID"
     string cytoBand;   "Cytoband"
     string dateLastEvaluated; "Last evaluation date"
-    string omimID; "OMIM Phenotype ID"
-    string omimDesc; "OMIM Phenotype Description"
+    string _omimID; "OMIM Phenotype ID - Deprecated"
+    string _omimDesc; "OMIM Phenotype Description - Deprecated"
     string triploScore; "Triploinsufficiency score"
     string triploDescription; "Triploinsufficiency phenotype description"
     string PMID1; "Associated PubMed ID 1"
     string PMID2; "Associated PubMed ID 2"
     string PMID3; "Associated PubMed ID 3"
     string PMID4; "Associated PubMed ID 4"
     string PMID5; "Associated PubMed ID 5"
     string PMID6; "Associated PubMed ID 6"
     lstring _mouseOver; "Mouseover string for the genome browser display"
+    string mondoID; "Mondo disease ontology ID"
     )