4654fecc7b9d5d905365bd72fee9d3fa4cb6724f
chmalee
  Thu Jan 13 12:38:46 2022 -0800
Staging updates to clingen tracks: slightly rework the otto job after changes to the clinGen website, get out links on description pages correct, refs #28453

diff --git src/hg/utils/otto/clinGen/makefile src/hg/utils/otto/clinGen/makefile
new file mode 100644
index 0000000..d56410e
--- /dev/null
+++ src/hg/utils/otto/clinGen/makefile
@@ -0,0 +1,17 @@
+PREFIX=/hive/data/outside/otto/clinGen/
+DOSAGE=clinGenDosage
+CNV=clinGenCnv
+
+installValidity:
+	cp makeGeneValidity.sh ${PREFIX}
+
+installCnv:
+	cp processClinGenCnv.py makeCnv.sh ${PREFIX}
+	cp clinGenCnv.as ${PREFIX}/${CNV}
+
+installDosage: 
+	cp processClinGenDosage.py makeDosage.sh ${PREFIX}
+	cp clinGenDosage{Haplo,Triplo}.as ${PREFIX}/${DOSAGE}
+
+install: installValidity installCnv installDosage
+	cp clinGenWrapper.sh checkClinGen.sh ${PREFIX}