a4d9358b20d4aac8c28a45b8b083ddaa01d8642e dschmelt Thu Jan 13 10:42:29 2022 -0800 MakeDoc commits for jaspar 2022 refs #28322 diff --git src/hg/makeDb/doc/hg38/jaspar.txt src/hg/makeDb/doc/hg38/jaspar.txt index bbc5f6b..32343dd 100644 --- src/hg/makeDb/doc/hg38/jaspar.txt +++ src/hg/makeDb/doc/hg38/jaspar.txt @@ -1,36 +1,45 @@ # JASPAR Track integration by Daniel 8/20/21 #trackDb copied in the hg19.txt makeDoc cd /hive/data/genomes/hg38/bed mkdir jaspar cd jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg38/JASPAR2018_hg38_all_chr.bb wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_hg38.bb mv JASPAR2020_hg38.bb JASPAR2020.bb mv JASPAR2018_hg38_all_chr.bb JASPAR2018.bb cd /gbdb/hg38 mkdir jaspar cd jaspar ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2018.bb . ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2020.bb . ############################################################################### # JASPAR 2022 track addition by Daniel 10/11/21 cd ~/kent/src/hg/makeDb/trackDb # trackDb copied in the hg19.txt makeDoc cd /hive/data/genomes/hg38/bed/jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb mv JASPAR2022_hg38.bb JASPAR2022.bb cd /gbdb/hg38/jaspar ln -s /hive/data/genomes/hg38/bed/jaspar/JASPAR2022.bb . ############################################################################### # JASPAR$ 2022 bigBed update 12/7/21 cd /hive/data/genomes/hg38/bed/jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb rm JASPAR2022.bb mv JASPAR2022_hg38.bb JASPAR2022.bb ls -lh ls -lh /gbdb/hg19/jaspar +############################################################################### + +# JASPAR$ 2022 bigBed update 1/3/22 +cd /hive/data/genomes/hg38/bed/jaspar +wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg38.bb +rm JASPAR2022.bb +mv JASPAR2022_hg38.bb JASPAR2022.bb +ls -lh +ls -lh /gbdb/hg19/jaspar