Commits for lrnassar

v425_base to v426_preview (2022-01-10 to 2022-01-18) v426

264a2adf9f451fa97fc754aa8aef2993d948cda6 Tue Jan 11 06:55:11 2022 -0800

• Removing api site from checked certs since it is not owned by us, no RM
  • src/utils/qa/checkHTTPS - lines changed 1, context: html, text, full: html, text

0a5b7d4334d05788314f2c5dd001257fbc774c3b Tue Jan 11 16:21:03 2022 -0800

• Adding the global flag for robustness, needed if orphanet ever goes over 1M items. refs #28686
  • src/hg/utils/otto/orphanet/checkOrphanet.sh - lines changed 2, context: html, text, full: html, text

d78141b96e8575777cf07baf350c865a7c15daed Tue Jan 11 16:47:30 2022 -0800

• Removing the dash from the non-coding RTS link, which, while still displaying the data in the RTS properly, the label at the top right of hgTracks would not appear. refs #28707
  • src/hg/htdocs/inc/recTrackSets.hg19.tab - lines changed 1, context: html, text, full: html, text

9add99453760c10170441f9ac73add6f17126b62 Tue Jan 11 17:03:51 2022 -0800

• Officially archiving the 2021 news, and adding new 2022 tag. No RM
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 8, context: html, text, full: html, text

20e3ee6ed0d5dd9ef3e54f64bac6e802002e8eb2 Fri Jan 14 09:26:50 2022 -0800

• Adding logic to check for genome-asia hubs, cleaning up the hubStatus logic so that public hubs never sneak into the list, and combining the report and save cronjobs into a single cron. No RM.
  • src/utils/qa/assemblyStatsCron.py - lines changed 112, context: html, text, full: html, text
  • src/utils/qa/assemblyStatsCronSaveStats.py - lines changed 214, context: html, text, full: html, text

f13e4a602cbdf7ca250f7b77c128a4641f3b18e1 Fri Jan 14 09:29:58 2022 -0800

• Removing the saveStats script since its funtionality was added to the original script assemblyStatsCron.
  • src/utils/qa/makefile - lines changed 1, context: html, text, full: html, text