0f37d4d1e887a759881ddfb77210df9cf6c3acdb markd Sun Jan 16 13:53:12 2022 -0800 inport of All GENCODE VM28 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index be87e09..29129ba 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -20,35 +20,35 @@ host=$(shell hostname) ppid=$(shell echo $$PPID) tmpExt = ${host}.${ppid}.tmp SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## -#preRelease = no -preRelease = yes -db = hg38 +preRelease = no +#preRelease = yes +#db = hg38 #db = hg19 -#db = mm39 +db = mm39 #db = mm10 ifeq (${db},mm10) grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 ver = M28 prevVer = M27