54406b80d5d435970989acff7b22dd6146c6b411
braney
  Sat Jan 22 15:24:59 2022 -0800
adding chrom alias support to big files

diff --git src/hg/hgc/wiggleClick.c src/hg/hgc/wiggleClick.c
index 1a39081..9230376 100644
--- src/hg/hgc/wiggleClick.c
+++ src/hg/hgc/wiggleClick.c
@@ -2,30 +2,31 @@
 
 /* Copyright (C) 2014 The Regents of the University of California 
  * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "wiggle.h"
 #include "cart.h"
 #include "hgc.h"
 #include "hCommon.h"
 #include "hgColors.h"
 #include "obscure.h"
 #include "hmmstats.h"
 #include "customTrack.h"
 #include "bigWig.h"
 #include "hdb.h"
+#include "chromAlias.h"
 
 
 void genericWiggleClick(struct sqlConnection *conn, struct trackDb *tdb, 
 	char *item, int start)
 /* Display details for Wiggle data tracks.
  *	conn may be NULL for custom tracks when from file */
 {
 char *chrom = cartString(cart, "c");
 char table[HDB_MAX_TABLE_STRING];
 unsigned span = 0;
 struct wiggleDataStream *wds = wiggleDataStreamNew();
 unsigned long long valuesMatched = 0;
 struct histoResult *histoGramResult;
 float *valuesArray = NULL;
 size_t valueCount = 0;
@@ -262,31 +263,31 @@
 {
 char *chrom = cartString(cart, "c");
 
 /* Open BigWig file and get interval list. */
 struct bbiFile *bbi = NULL;
 struct lm *lm = lmInit(0);
 struct bbiInterval *bbList = NULL;
 char *maxWinToQuery = trackDbSettingClosestToHome(tdb, "maxWindowToQuery");
 
 unsigned maxWTQ = 0;
 if (isNotEmpty(maxWinToQuery))
     maxWTQ = sqlUnsigned(maxWinToQuery);
 
 if ((maxWinToQuery == NULL) || (maxWTQ > winEnd-winStart))
     {
-    bbi = bigWigFileOpen(fileName);
+    bbi = bigWigFileOpenAlias(fileName, chromAliasGetHash(database));
     bbList = bigWigIntervalQuery(bbi, chrom, winStart, winEnd, lm);
     }
 
 char num1Buf[64], num2Buf[64]; /* big enough for 2^64 (and then some) */
 sprintLongWithCommas(num1Buf, BASE_1(winStart));
 sprintLongWithCommas(num2Buf, winEnd);
 printf("<B>Position: </B> %s:%s-%s<BR>\n", chrom, num1Buf, num2Buf );
 sprintLongWithCommas(num1Buf, winEnd-winStart);
 printf("<B>Total Bases in view: </B> %s <BR>\n", num1Buf);
 
 if (bbList != NULL)
     {
     bbiIntervalStatsReport(bbList, tdb->table, chrom, winStart, winEnd);
     }
 else if ((bbi == NULL) && (maxWTQ <= winEnd-winStart))