6a634821ca3d72356dc52fc816c3b4651c471e3c
braney
  Tue Feb 15 16:48:29 2022 -0800
make a bigBed version of the TOGA track

diff --git src/hg/lib/togaData.as src/hg/lib/togaData.as
new file mode 100644
index 0000000..b196fb5
--- /dev/null
+++ src/hg/lib/togaData.as
@@ -0,0 +1,36 @@
+table TOGABigData
+    "TOGA Big Data"
+    (
+    string chrom;      "Chromosome (or contig, scaffold, etc.)"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Name of item"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "+ or -"
+    uint thickStart;   "Start of where display should be thick (start codon)"
+    uint thickEnd;     "End of where display should be thick (stop codon)"
+    uint reserved;     "Used as itemRgb as of 2004-11-22"
+    int blockCount;    "Number of blocks"
+    int[blockCount] blockSizes; "Comma separated list of block sizes"
+    int[blockCount] chromStarts; "Start positions relative to chromStart"
+
+    string ref_transcript_ID;"transcript ID in reference"
+    string ref_region;    "transcript region in reference"
+    string query_region;  "projection region in query"
+    float chain_score;    "chain orthology score"
+    int chain_synteny;    "chain synteny"
+    float chain_flank;    "flank coverage"
+    float chain_gl_cds_fract;"global CDS fraction"
+    float chain_loc_cds_fract;"local CDS fraction"
+    float chain_exon_cov; "local CDS coverage"
+    float chain_intron_cov;"local intron coverage"
+    string status;        "projection GLP status: loss, intact, etc"
+    float perc_intact_ign_M;"%intact ignoring Missing"
+    float perc_intact_int_M;"%intact considering missing seq intact"
+    float intact_codon_prop;"% of intact codons"
+    float ouf_prop;       "out of chain proportion"
+    ubyte mid_intact;     "middle 80% intact? 1 - True 0 - False, else - undefined"
+    ubyte mid_pres;       "middle 80% present? 1 - True 0 - False, else - undefined"
+    lstring prot_sequence;"protein sequence"
+    lstring svg_plot;     "svg string"
+    )