6a634821ca3d72356dc52fc816c3b4651c471e3c
braney
  Tue Feb 15 16:48:29 2022 -0800
make a bigBed version of the TOGA track

diff --git src/hg/lib/togaNucl.as src/hg/lib/togaNucl.as
new file mode 100644
index 0000000..f9bd2c3
--- /dev/null
+++ src/hg/lib/togaNucl.as
@@ -0,0 +1,18 @@
+table TOGANucl
+"TOGA nucleotide alignment"
+    (
+    string chrom;      "Chromosome (or contig, scaffold, etc.)"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Name of item"
+
+    int exon_num;         "exon number"
+    string exon_region;   "region where exon was detected"
+    float pid;            "nucleotide %id"
+    float blosum;         "normalized blosum score"
+    ubyte gaps;           "are there any asm gaps near? 1 - yes 0 - no"
+    string ali_class;     "alignemnt class: A, B, C, A+"
+    string exp_region;    "where exon was expected"
+    ubyte in_exp_region;  "detected in expected region or not 1 yes 0 no"
+    lstring alignment;    "exon sequence in query"
+    )