6684918996cf61c1d1a7fb5ee3e6cb3a8a23f083
hiram
  Fri Feb 18 09:27:46 2022 -0800
version 0 before beginning modifications refs #28930

diff --git src/hg/gar/rebuild.sh src/hg/gar/rebuild.sh
new file mode 100755
index 0000000..8a88779
--- /dev/null
+++ src/hg/gar/rebuild.sh
@@ -0,0 +1,32 @@
+#!/bin/bash
+
+
+
+set -beEu -o pipefail
+
+if [ $# -ne 1 ]; then
+  printf "usage: rebuild.sh makeItSo\n" 1>&2
+  exit 255
+fi
+
+if [ "$1" != "makeItSo" ]; then
+  printf "usage: rebuild.sh makeItSo\n" 1>&2
+  exit 255
+fi
+
+export srcDir="$HOME/kent/src/hg/gar"
+export dateStamp=`date "+%F"`
+export workDir="/hive/data/outside/ncbi/genomes/gar/$dateStamp"
+
+if [ ! -d "${workDir}" ]; then
+  mkdir "${workDir}"
+fi
+
+printf "$workDir\n"
+cd "${workDir}"
+printf "### running time ucscEquiv.sh ###\n"
+time $srcDir/ucscEquiv.sh
+printf "### running time garTable.sh ###\n"
+time $srcDir/garTable.sh > index.html 2> ${dateStamp}.log
+chmod +x index.html
+printf "### finished ###\n"