d7ff43fdbd408928d1d0b66a1f791e4635032c47
markd
  Sun Feb 20 08:44:04 2022 -0800
add program to take repeat masker .align.tsv files and convert to PSL for use with pslMap

diff --git src/hg/utils/makefile src/hg/utils/makefile
index 3e3eaf0..13a6d7f 100644
--- src/hg/utils/makefile
+++ src/hg/utils/makefile
@@ -41,30 +41,31 @@
 	gff3ToPsl \
 	gtfToGenePred \
 	hicInfo \
 	hgvsToVcf \
 	hubCheck \
 	hubClone \
 	hubPublicCheck \
 	mafToBigMaf \
 	makeTableList \
 	oligoMatch \
 	overlapSelect \
 	positionalTblCheck \
 	pslLiftSubrangeBlat \
 	pslToBigPsl \
 	raSqlQuery \
+	rmskAlignToPsl \
 	tdbQuery \
 	transMapPslToGenePred \
 	twoBitMask \
 	vcfToBed
 
 USER_APP_SCRIPTS = \
 	vai.pl
 
 SCRIPT_FILES = \
 	archiveTracks.sh \
 	dbNsfpToBed.pl \
 	dumpDb.pl \
 	mergeOverlapBed4.pl \
 	mergeSortedBed3Plus.pl \
 	mysqlRowSizes.pl \