c64fb92069b7de689f74f37765554ec8c3b31d54
max
  Tue Feb 1 05:47:43 2022 -0800
updating Twist exome 2.0 again, email with Brian lee and Tina Han from Twist, refs #28655

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index f4bb2e9..d831a2b 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -34056,30 +34056,41 @@
 Download: https://www.twistbioscience.com/sites/default/files/resources/2019-09/Twist_Exome_RefSeq_targets_hg19_0.bed
 File name: Twist_Exome_RefSeq_targets_hg19_0.bed
 
 Track: Twist - Core Exome Panel Target Regions
 Download: https://www.twistbioscience.com/sites/default/files/resources/2018-09/Twist_Exome_Target_hg19.bed
 File name: Twist_Exome_Target_hg19.bed
 
 Track: Twist - Comprehensive Exome Panel Target Regions
 Download: https://www.twistbioscience.com/sites/default/files/resources/2020-09/Twist_ComprehensiveExome_targets_hg19.bed
 File name: Twist_ComprehensiveExome_targets_hg19.bed
 
 Track: Twist - Exome 2.1
 Download: curl https://www.twistbioscience.com/sites/default/files/resources/2021-10/hg38_Twist_exome_2_1_annotated_targets.bed | cut -f1-3 > TwistExome21.bed
 bedToBigBed TwistExome21.bed ../../chrom.sizes TwistExome21.bb -type=bed3
 
+# Updated on Feb 1, 2021 (max): got a corrected file from Tina Han <than@twistbioscience.com>
+To stay consistent, I kept the original filename TwistExome21.bb even though this 
+is not the 2.1 version anymore. Confusing, Twist went from 2.0 to 2.1 and then to 2.0.1 (!!)
+So 2.0.1 is more recent than 2.1.
+Original filename from Tina was: hg19_exome_v2.0.2_targets_sorted_validated.annotated.bed.gz
+
+mv TwistExome21.bb TwistExome21.old.bb
+cut TwistExome202.bed -f1-3 > TwistExome202.cut.bed
+bedToBigBed TwistExome202.cut.bed ../../chrom.sizes TwistExome21.bb -type=bed3
+
+
 # MGI Datasets:
 
 Track: MGI - Easy Exome Capture V4 Target Regions
 Download: https://en.mgitech.cn/Uploads/Temp/file/20191225/5e03126e808a0.zip
 File name: MGI_Exome_Capture_V4.bed
 
 Track: MGI - Easy Exome Capture V5 Target Regions
 Download: https://en.mgitech.cn/Uploads/Temp/file/20191225/5e0312a7be43e.zip
 File name: MGI_Exome_Capture_V5.bed
 
 # Agilent Datasets:
 Download for all Agilent files: https://earray.chem.agilent.com/suredesign/ - Password needed (from Ana)
 
 Track: Agilent - SureSelect Clinical Research Exome Covered by Probes
 File name: S06588914_Covered.bed