c014326efaedb835a44760dbe4e2ed4c8e992412
braney
  Thu Feb 10 14:13:21 2022 -0800
add some tests to subColumn

diff --git src/utils/subColumn/tests/expected/outputMiss.bed src/utils/subColumn/tests/expected/outputMiss.bed
new file mode 100644
index 0000000..c903c05
--- /dev/null
+++ src/utils/subColumn/tests/expected/outputMiss.bed
@@ -0,0 +1,209 @@
+chr10_GL383545v1_alt
+chr10_GL383546v1_alt
+chr10_KI270825v1_alt
+chr11_JH159136v1_alt
+chr11_JH159137v1_alt
+chr11_KI270829v1_alt
+chr11_KI270830v1_alt
+chr11_KI270831v1_alt
+chr11_KI270832v1_alt
+chr11_KI270902v1_alt
+chr11_KI270903v1_alt
+chr11_KI270927v1_alt
+chr12_GL383550v2_alt
+chr12_GL383551v1_alt
+chr12_GL383552v1_alt
+chr12_GL383553v2_alt
+chr12_GL877875v1_alt
+chr12_GL877876v1_alt
+chr12_KI270833v1_alt
+chr12_KI270834v1_alt
+chr12_KI270835v1_alt
+chr12_KI270837v1_alt
+chr12_KI270904v1_alt
+chr13_KI270838v1_alt
+chr13_KI270840v1_alt
+chr14_KI270844v1_alt
+chr14_KI270845v1_alt
+chr14_KI270846v1_alt
+chr14_KI270847v1_alt
+chr15_GL383554v1_alt
+chr15_GL383555v2_alt
+chr15_KI270848v1_alt
+chr15_KI270849v1_alt
+chr15_KI270850v1_alt
+chr15_KI270851v1_alt
+chr15_KI270852v1_alt
+chr15_KI270905v1_alt
+chr15_KI270906v1_alt
+chr16_GL383556v1_alt
+chr16_GL383557v1_alt
+chr16_KI270853v1_alt
+chr16_KI270854v1_alt
+chr16_KI270855v1_alt
+chr16_KI270856v1_alt
+chr17_GL000258v2_alt
+chr17_GL383563v3_alt
+chr17_GL383564v2_alt
+chr17_JH159146v1_alt
+chr17_JH159147v1_alt
+chr17_JH159148v1_alt
+chr17_KI270857v1_alt
+chr17_KI270858v1_alt
+chr17_KI270860v1_alt
+chr17_KI270861v1_alt
+chr17_KI270862v1_alt
+chr17_KI270907v1_alt
+chr17_KI270908v1_alt
+chr17_KI270909v1_alt
+chr17_KI270910v1_alt
+chr18_GL383567v1_alt
+chr18_GL383569v1_alt
+chr18_GL383571v1_alt
+chr18_GL383572v1_alt
+chr18_KI270911v1_alt
+chr18_KI270912v1_alt
+chr19_GL000209v2_alt
+chr19_GL383573v1_alt
+chr19_GL383574v1_alt
+chr19_GL383575v2_alt
+chr19_GL383576v1_alt
+chr19_GL949746v1_alt
+chr19_GL949747v2_alt
+chr19_GL949748v2_alt
+chr19_GL949749v2_alt
+chr19_GL949750v2_alt
+chr19_GL949751v2_alt
+chr19_GL949752v1_alt
+chr19_GL949753v2_alt
+chr19_KI270865v1_alt
+chr19_KI270867v1_alt
+chr19_KI270868v1_alt
+chr19_KI270882v1_alt
+chr19_KI270883v1_alt
+chr19_KI270884v1_alt
+chr19_KI270885v1_alt
+chr19_KI270886v1_alt
+chr19_KI270887v1_alt
+chr19_KI270888v1_alt
+chr19_KI270889v1_alt
+chr19_KI270890v1_alt
+chr19_KI270891v1_alt
+chr19_KI270914v1_alt
+chr19_KI270915v1_alt
+chr19_KI270916v1_alt
+chr19_KI270917v1_alt
+chr19_KI270918v1_alt
+chr19_KI270919v1_alt
+chr19_KI270920v1_alt
+chr19_KI270921v1_alt
+chr19_KI270922v1_alt
+chr19_KI270923v1_alt
+chr19_KI270929v1_alt
+chr19_KI270930v1_alt
+chr19_KI270931v1_alt
+chr19_KI270932v1_alt
+chr19_KI270933v1_alt
+chr19_KI270938v1_alt
+chr1_GL383518v1_alt
+chr1_GL383519v1_alt
+chr1_GL383520v2_alt
+chr1_KI270759v1_alt
+chr1_KI270761v1_alt
+chr1_KI270762v1_alt
+chr1_KI270763v1_alt
+chr1_KI270765v1_alt
+chr1_KI270766v1_alt
+chr1_KI270892v1_alt
+chr20_GL383577v2_alt
+chr20_KI270869v1_alt
+chr20_KI270870v1_alt
+chr21_GL383579v2_alt
+chr21_GL383580v2_alt
+chr21_GL383581v2_alt
+chr21_KI270872v1_alt
+chr22_GL383582v2_alt
+chr22_GL383583v2_alt
+chr22_KB663609v1_alt
+chr22_KI270875v1_alt
+chr22_KI270876v1_alt
+chr22_KI270877v1_alt
+chr22_KI270878v1_alt
+chr22_KI270879v1_alt
+chr22_KI270928v1_alt
+chr2_GL383521v1_alt
+chr2_GL383522v1_alt
+chr2_KI270768v1_alt
+chr2_KI270769v1_alt
+chr2_KI270776v1_alt
+chr2_KI270894v1_alt
+chr3_GL383526v1_alt
+chr3_JH636055v2_alt
+chr3_KI270777v1_alt
+chr3_KI270779v1_alt
+chr3_KI270780v1_alt
+chr3_KI270782v1_alt
+chr3_KI270784v1_alt
+chr3_KI270895v1_alt
+chr3_KI270924v1_alt
+chr3_KI270934v1_alt
+chr3_KI270935v1_alt
+chr3_KI270936v1_alt
+chr3_KI270937v1_alt
+chr4_GL000257v2_alt
+chr4_GL383527v1_alt
+chr4_GL383528v1_alt
+chr4_KI270786v1_alt
+chr4_KI270789v1_alt
+chr4_KI270896v1_alt
+chr4_KI270925v1_alt
+chr5_GL339449v2_alt
+chr5_GL383531v1_alt
+chr5_GL383532v1_alt
+chr5_GL949742v1_alt
+chr5_KI270791v1_alt
+chr5_KI270792v1_alt
+chr5_KI270793v1_alt
+chr5_KI270794v1_alt
+chr5_KI270795v1_alt
+chr5_KI270796v1_alt
+chr5_KI270897v1_alt
+chr5_KI270898v1_alt
+chr6_GL000250v2_alt
+chr6_GL000251v2_alt
+chr6_GL000252v2_alt
+chr6_GL000253v2_alt
+chr6_GL000254v2_alt
+chr6_GL000255v2_alt
+chr6_GL000256v2_alt
+chr6_GL383533v1_alt
+chr6_KI270758v1_alt
+chr6_KI270797v1_alt
+chr6_KI270798v1_alt
+chr6_KI270800v1_alt
+chr6_KI270801v1_alt
+chr7_GL383534v2_alt
+chr7_KI270803v1_alt
+chr7_KI270806v1_alt
+chr7_KI270808v1_alt
+chr7_KI270809v1_alt
+chr8_KI270810v1_alt
+chr8_KI270811v1_alt
+chr8_KI270813v1_alt
+chr8_KI270814v1_alt
+chr8_KI270815v1_alt
+chr8_KI270816v1_alt
+chr8_KI270817v1_alt
+chr8_KI270819v1_alt
+chr8_KI270821v1_alt
+chr8_KI270822v1_alt
+chr8_KI270900v1_alt
+chr8_KI270926v1_alt
+chr9_GL383539v1_alt
+chr9_GL383540v1_alt
+chr9_GL383541v1_alt
+chr9_GL383542v1_alt
+chr9_KI270823v1_alt
+chrX_KI270880v1_alt
+chrX_KI270881v1_alt
+chrX_KI270913v1_alt