c014326efaedb835a44760dbe4e2ed4c8e992412 braney Thu Feb 10 14:13:21 2022 -0800 add some tests to subColumn diff --git src/utils/subColumn/tests/expected/passMissing.tab src/utils/subColumn/tests/expected/passMissing.tab new file mode 100644 index 0000000..55921db --- /dev/null +++ src/utils/subColumn/tests/expected/passMissing.tab @@ -0,0 +1,268 @@ +1 11868 14409 ENST00000456328.2 1000 + 11868 11868 0,255,0 3 359,109,1189, 0,744,1352, DDX11L1 none none -1,-1,-1, ENST00000456328.2 DDX11L1 +10 14060 14604 ENST00000562162.1 1000 - 14060 14060 0,255,0 2 239,108, 0,436, RP11-631M21.1 none none -1,-1, ENST00000562162.1 RP11-631M21.1 +chr10_GL383545v1_alt 3014 3203 ENST00000620136.1 1000 + 3014 3014 0,255,0 1 189, 0, ARMC4P1 none none -1, ENST00000620136.1 ARMC4P1 +chr10_GL383546v1_alt 1491 1693 ENST00000618964.1 1000 + 1491 1491 0,255,0 1 202, 0, ANKRD30BP3 none none -1, ENST00000618964.1 ANKRD30BP3 +chr10_KI270825v1_alt 15642 15747 ENST00000516518.2 1000 - 15642 15642 0,255,0 1 105, 0, U6 none none -1, ENST00000516518.2 U6 +11 75779 76143 ENST00000519787.1 1000 + 75779 75779 0,255,0 1 364, 0, RP11-304M2.1 none none -1, ENST00000519787.1 RP11-304M2.1 +chr11_JH159136v1_alt 21621 22569 ENST00000570683.2 1000 - 21621 21621 0,255,0 2 756,189, 0,759, AC022882.1 none none -1,-1, ENST00000570683.2 AC022882.1 +chr11_JH159137v1_alt 7153 8071 ENST00000573911.1 1000 + 7153 8071 0,255,0 1 918, 0, AC213223.1 cmpl cmpl 0, ENST00000573911.1 AC213223.1 +KI270721.1 2584 11802 ENST00000612848.1 1000 + 2675 11615 0,255,0 5 108,123,83,74,352, 0,3509,4737,5392,8866, AC004556.1 cmpl cmpl 0,2,2,1,0, ENST00000612848.1 AC004556.1 +chr11_KI270829v1_alt 16841 17810 ENST00000611603.1 1000 - 16841 17810 0,255,0 1 969, 0, OR5P2 cmpl cmpl 0, ENST00000611603.1 OR5P2 +chr11_KI270830v1_alt 36287 48173 ENST00000617829.1 1000 - 38754 48063 0,255,0 6 3524,124,160,167,139,341, 0,3743,4061,4838,9800,11545, DUSP8 cmpl cmpl 2,1,0,1,0,0, ENST00000617829.1 DUSP8 +chr11_KI270831v1_alt 102233 104276 ENST00000610870.1 1000 + 102869 104056 0,255,0 2 804,259, 0,1784, KCNQ1DN cmpl cmpl 0,0, ENST00000610870.1 KCNQ1DN +chr11_KI270832v1_alt 24153 33211 ENST00000621211.1 1000 - 24331 31803 0,255,0 9 266,171,171,171,171,171,171,171,1509, 0,370,3458,3944,4250,4502,5316,5971,7549, RNH1 cmpl cmpl 2,2,2,2,2,2,2,2,0, ENST00000621211.1 RNH1 +chr11_KI270902v1_alt 11163 11267 ENST00000613601.1 1000 + 11163 11163 0,255,0 1 104, 0, U6 none none -1, ENST00000613601.1 U6 +chr11_KI270903v1_alt 30577 42463 ENST00000610856.1 1000 - 33044 42353 0,255,0 6 3524,124,160,167,139,341, 0,3743,4061,4838,9800,11545, DUSP8 cmpl cmpl 2,1,0,1,0,0, ENST00000610856.1 DUSP8 +chr11_KI270927v1_alt 11163 11267 ENST00000617996.1 1000 + 11163 11163 0,255,0 1 104, 0, U6 none none -1, ENST00000617996.1 U6 +12 12309 13501 ENST00000535849.1 1000 + 12309 12309 0,255,0 4 49,85,100,132, 0,430,792,1060, DDX11L8 none none -1,-1,-1,-1, ENST00000535849.1 DDX11L8 +chr12_GL383550v2_alt 2337 3327 ENST00000570447.1 1000 - 2337 2337 0,255,0 2 480,225, 0,765, RP11-620J15.3 none none -1,-1, ENST00000570447.1 RP11-620J15.3 +chr12_GL383551v1_alt 136878 137741 ENST00000610694.1 1000 + 136878 136878 0,255,0 2 104,671, 0,192, RP4-809F18.2 none none -1,-1, ENST00000610694.1 RP4-809F18.2 +chr12_GL383552v1_alt 97953 98679 ENST00000572611.1 1000 + 97953 97953 0,255,0 1 726, 0, RPS6P22 none none -1, ENST00000572611.1 RPS6P22 +chr12_GL383553v2_alt 0 17043 ENST00000570509.4 1000 + 0 15472 0,255,0 5 112,120,106,196,781, 0,5080,8921,15280,16262, ANO4 incmpl cmpl 1,2,2,0,-1, ENST00000570509.4 ANO4 +chr12_GL877875v1_alt 2309 3501 ENST00000572276.1 1000 + 2309 2309 0,255,0 4 49,85,100,132, 0,430,792,1060, DDX11L8 none none -1,-1,-1,-1, ENST00000572276.1 DDX11L8 +chr12_GL877876v1_alt 237 1333 ENST00000574656.1 1000 - 319 1276 0,255,0 1 1096, 0, TAS2R7 cmpl cmpl 0, ENST00000574656.1 TAS2R7 +chr12_KI270833v1_alt 14812 49260 ENST00000613226.1 1000 + 19516 48526 0,255,0 21 259,90,112,126,215,122,81,198,112,127,118,115,188,73,201,104,71,154,126,148,851, 0,4692,5102,7865,8482,9053,10215,11351,11968,16649,17000,17665,19030,19593,23292,23610,24878,25103,29248,33291,33597, PIWIL1 cmpl cmpl -1,0,0,1,1,0,2,2,2,0,1,2,0,2,0,0,2,1,2,2,0, ENST00000613226.1 PIWIL1 +chr12_KI270834v1_alt 109960 117885 ENST00000614047.1 1000 - 110601 117849 0,255,0 4 1414,42,147,70, 0,6327,6930,7855, CCDC92 cmpl cmpl 1,1,1,0, ENST00000614047.1 CCDC92 +chr12_KI270835v1_alt 301 96948 ENST00000621609.1 1000 - 301 96948 0,255,0 33 29,103,69,91,113,179,246,166,75,157,82,174,84,52,119,130,229,93,149,171,150,196,242,159,110,121,118,85,169,68,157,184,32, 0,1200,2615,3056,4578,5265,15827,16837,18141,20209,20998,21841,22735,23607,24369,26070,26444,27111,28607,29563,35397,35902,38373,39307,39807,40665,44825,48478,49378,69295,90915,91544,96615, AC024940.1 cmpl cmpl 1,0,0,2,0,1,1,0,0,2,1,1,1,0,1,0,2,2,0,0,0,2,0,0,1,0,2,1,0,1,0,2,0, ENST00000621609.1 AC024940.1 +chr12_KI270837v1_alt 14597 19176 ENST00000612920.1 1000 - 15883 19141 0,255,0 5 109,1058,126,36,99, 0,1253,2866,3509,4480, AC238694.1 cmpl cmpl -1,1,1,1,0, ENST00000612920.1 AC238694.1 +chr12_KI270904v1_alt 237 1333 ENST00000613239.1 1000 - 319 1276 0,255,0 1 1096, 0, HOSA(BIAKA)-T2R7 cmpl cmpl 0, ENST00000613239.1 HOSA(BIAKA)-T2R7 +13 18235499 18237167 ENST00000613127.1 1000 + 18235499 18237167 0,255,0 1 1668, 0, AL356585.2 cmpl cmpl 0, ENST00000613127.1 AL356585.2 +chr13_KI270838v1_alt 177306 235665 ENST00000610393.1 1000 + 177355 235519 0,255,0 7 143,57,90,108,96,78,211, 0,16684,21712,22729,24732,56107,58148, SPACA7 cmpl cmpl 0,1,1,1,1,1,1, ENST00000610393.1 SPACA7 +chr13_KI270840v1_alt 170834 170941 ENST00000615657.1 1000 - 170834 170834 0,255,0 1 107, 0, U6 none none -1, ENST00000615657.1 U6 +14 18333825 18340659 ENST00000553170.1 1000 + 18333825 18333825 0,255,0 3 71,174,46, 0,4417,6788, RP11-754I20.1 none none -1,-1,-1, ENST00000553170.1 RP11-754I20.1 +GL000009.2 56139 58376 ENST00000618686.1 1000 - 58080 58308 0,255,0 1 2237, 0, BX004987.4 cmpl cmpl 0, ENST00000618686.1 BX004987.4 +GL000194.1 53589 115018 ENST00000613230.1 1000 - 53646 54021 0,255,0 3 2087,59,33, 0,59202,61396, MAFIP cmpl cmpl 0,-1,-1, ENST00000613230.1 MAFIP +GL000225.1 37717 37800 ENST00000618260.1 1000 + 37717 37717 0,255,0 1 83, 0, AL671532.1 none none -1, ENST00000618260.1 AL671532.1 +KI270722.1 106374 106457 ENST00000618126.1 1000 + 106374 106374 0,255,0 1 83, 0, AC138774.3 none none -1, ENST00000618126.1 AC138774.3 +KI270723.1 32132 32228 ENST00000617107.1 1000 - 32132 32132 0,255,0 1 96, 0, AC242006.1 none none -1, ENST00000617107.1 AC242006.1 +KI270724.1 1528 1607 ENST00000619704.1 1000 - 1528 1528 0,255,0 1 79, 0, AC242209.2 none none -1, ENST00000619704.1 AC242209.2 +KI270726.1 26240 26534 ENST00000619729.1 1000 + 26240 26534 0,255,0 1 294, 0, AC233755.2 incmpl incmpl 0, ENST00000619729.1 AC233755.2 +chr14_KI270844v1_alt 44909 199864 ENST00000619027.1 1000 - 45024 197274 0,255,0 27 334,75,101,136,111,111,198,140,330,188,155,155,145,159,150,47,67,33,119,96,150,96,61,141,89,79,140, 0,6428,7204,8760,11118,27520,29705,36822,40825,44041,59310,61981,82722,92699,95752,97061,106762,114408,116011,116269,127437,131026,142303,145934,147965,152286,154815, CATSPERB cmpl cmpl 0,0,1,0,0,0,0,1,1,2,0,1,0,0,0,1,0,0,1,1,1,1,0,0,1,0,-1, ENST00000619027.1 CATSPERB +chr14_KI270845v1_alt 137506 147669 ENST00000619279.1 1000 + 144253 146606 0,255,0 5 320,127,130,36,1269, 0,6731,8065,8590,8894, NRAC cmpl cmpl -1,0,0,1,1, ENST00000619279.1 NRAC +chr14_KI270846v1_alt 55242 56751 ENST00000622473.1 1000 - 55292 56751 0,255,0 3 445,321,307, 0,667,1202, IGH@ cmpl incmpl 1,1,0, ENST00000622473.1 IGH@ +chr14_KI270847v1_alt 37661 49853 ENST00000613166.1 1000 + 37921 49446 0,255,0 8 306,47,94,69,99,453,482,491, 0,1099,3505,4450,6617,8150,9270,11701, CHGA cmpl cmpl 0,1,0,1,1,1,1,0, ENST00000613166.1 CHGA +15 19878554 19887814 ENST00000524329.1 1000 + 19878554 19878554 0,255,0 6 114,174,107,163,65,91, 0,276,2646,3722,6424,9169, RP11-79C23.1 none none -1,-1,-1,-1,-1,-1, ENST00000524329.1 RP11-79C23.1 +chr15_GL383554v1_alt 3652 3730 ENST00000617112.1 1000 + 3652 3730 0,255,0 1 78, 0, RPL41 cmpl cmpl 0, ENST00000617112.1 RPL41 +chr15_GL383555v2_alt 5554 357702 ENST00000614717.1 1000 - 5554 232358 0,255,0 20 237,129,129,129,129,135,147,103,164,121,175,213,137,121,247,93,101,102,128,143, 0,1733,2411,3091,4229,8601,9086,14688,15983,17086,43810,51171,56816,67041,68505,180655,217486,222299,226706,352005, MEGF11 incmpl cmpl 1,1,1,1,1,1,1,0,1,0,2,2,0,2,1,1,2,2,0,-1, ENST00000614717.1 MEGF11 +KI270727.1 20740 22392 ENST00000615005.1 1000 - 20740 20740 0,255,0 2 887,764, 0,888, AC136352.9 none none -1,-1, ENST00000615005.1 AC136352.9 +chr15_KI270848v1_alt 96179 136694 ENST00000620361.1 1000 - 96821 136564 0,255,0 23 689,101,89,126,179,121,85,183,189,199,269,116,203,247,94,90,115,136,80,97,109,54,276, 0,1391,3891,4923,6253,6876,7092,9521,10771,11959,18610,20056,22796,24783,25573,26952,28028,31723,32788,33566,37740,37942,40239, AC135069.1 cmpl cmpl 1,2,0,0,1,0,2,2,2,1,2,0,1,0,2,2,1,0,1,0,2,2,0, ENST00000620361.1 AC135069.1 +chr15_KI270849v1_alt 20669 20767 ENST00000384660.2 1000 - 20669 20669 0,255,0 1 98, 0, Y_RNA none none -1, ENST00000384660.2 Y_RNA +chr15_KI270850v1_alt 52808 59452 ENST00000618409.1 1000 - 52808 59452 0,255,0 10 133,103,61,463,232,88,81,60,120,84, 0,342,1485,1812,2461,3077,3829,4095,4777,6560, AC126339.2 cmpl cmpl 2,1,0,2,1,0,0,0,0,0, ENST00000618409.1 AC126339.2 +chr15_KI270851v1_alt 69153 82476 ENST00000618143.1 1000 - 72108 76961 0,255,0 18 3140,153,101,101,92,76,69,257,88,108,90,110,85,360,81,60,120,146, 0,3225,3467,3650,4319,4842,6286,6622,7248,7531,7745,8856,9061,9234,10449,10713,11358,13177, AC136687.2 cmpl cmpl 1,1,2,0,1,0,0,1,0,0,0,-1,-1,-1,-1,-1,-1,-1, ENST00000618143.1 AC136687.2 +chr15_KI270852v1_alt 51491 53143 ENST00000615953.1 1000 - 51491 51491 0,255,0 2 887,764, 0,888, AC136352.2 none none -1,-1, ENST00000615953.1 AC136352.2 +chr15_KI270905v1_alt 119437 150432 ENST00000619392.1 1000 - 119437 150432 0,255,0 6 18,57,66,72,154,29, 0,1416,4432,5407,29638,30966, AC243653.2 incmpl cmpl 0,0,0,0,2,0, ENST00000619392.1 AC243653.2 +chr15_KI270906v1_alt 96575 106332 ENST00000611085.1 1000 - 98299 106241 0,255,0 9 1748,1203,142,59,107,94,51,129,289, 0,2404,4264,4736,6173,6375,6557,7693,9468, GOLGA6L22 cmpl cmpl 0,0,2,0,1,0,0,0,0, ENST00000611085.1 GOLGA6L22 +16 11554 14090 ENST00000513886.1 1000 + 11554 11554 0,255,0 3 354,109,1189, 0,739,1347, DDX11L10 none none -1,-1,-1, ENST00000513886.1 DDX11L10 +chr16_GL383556v1_alt 26726 57019 ENST00000571922.2 1000 - 26921 56960 0,255,0 14 379,73,132,148,84,141,39,105,108,154,134,145,205,111, 0,675,3479,7667,8077,10054,14075,16686,17523,18519,20701,23302,25921,30182, CES1 cmpl cmpl 2,1,1,0,0,0,0,0,0,2,0,2,1,0, ENST00000571922.2 CES1 +chr16_GL383557v1_alt 3027 28858 ENST00000575702.2 1000 + 3027 28774 0,255,0 12 212,172,92,97,65,123,157,107,96,186,111,201, 0,7359,7635,10406,11215,12693,13906,17179,19905,22154,23888,25630, CIRH1A incmpl cmpl 1,0,1,0,1,0,0,1,0,0,0,0, ENST00000575702.2 CIRH1A +KI270728.1 17233 19833 ENST00000616638.1 1000 + 17263 18366 0,255,0 2 268,1538, 0,1062, AC133551.1 cmpl cmpl 0,1, ENST00000616638.1 AC133551.1 +chr16_KI270853v1_alt 8556 203127 ENST00000615183.1 1000 - 9573 202981 0,255,0 24 1073,194,190,75,87,56,70,111,76,43,44,78,57,81,43,39,66,166,61,82,68,80,78,165, 0,11188,46938,116321,118365,119954,145174,146481,148647,149049,150618,157601,164204,168446,170784,172581,173358,174944,181889,191405,191568,192471,193896,194406, PARN cmpl cmpl 1,2,1,1,1,2,1,1,0,2,0,0,0,0,2,2,2,1,0,2,0,1,1,0, ENST00000615183.1 PARN +chr16_KI270854v1_alt 1003 11632 ENST00000613476.1 1000 + 1109 10724 0,255,0 9 186,69,52,136,125,94,105,218,597, 0,3098,4488,5567,8385,8833,9114,9503,10032, DECR2 cmpl cmpl 0,2,2,0,1,0,1,1,-1, ENST00000613476.1 DECR2 +chr16_KI270855v1_alt 32587 39961 ENST00000612491.1 1000 + 32644 37888 0,255,0 6 229,173,177,134,119,2873, 0,1123,2577,2836,3051,4501, GLIS2 cmpl cmpl 0,1,0,0,2,1, ENST00000612491.1 GLIS2 +chr16_KI270856v1_alt 41592 48453 ENST00000293937.4 1000 - 41719 48453 0,255,0 2 743,413, 0,6448, HS3ST6 cmpl cmpl 2,0, ENST00000293937.4 HS3ST6 +17 90795 90899 ENST00000620287.1 1000 - 90795 90795 0,255,0 1 104, 0, U6 none none -1, ENST00000620287.1 U6 +GL000205.2 9150 9226 ENST00000616723.1 1000 + 9150 9150 0,255,0 1 76, 0, AC011841.4 none none -1, ENST00000616723.1 AC011841.4 +chr17_GL000258v2_alt 17868 18000 ENST00000614507.1 1000 - 17868 17868 0,255,0 1 132, 0, 5S_rRNA none none -1, ENST00000614507.1 5S_rRNA +chr17_GL383563v3_alt 30795 30899 ENST00000613955.1 1000 - 30795 30795 0,255,0 1 104, 0, U6 none none -1, ENST00000613955.1 U6 +chr17_GL383564v2_alt 590 2144 ENST00000572734.1 1000 - 590 2144 0,255,0 1 1554, 0, KRTAP16-1 cmpl cmpl 0, ENST00000572734.1 KRTAP16-1 +chr17_JH159146v1_alt 67 12550 ENST00000585210.1 1000 + 67 67 0,255,0 2 61,197, 0,12286, RP5-1110E20.1 none none -1,-1, ENST00000585210.1 RP5-1110E20.1 +chr17_JH159147v1_alt 185 12251 ENST00000615963.1 1000 + 212 12023 0,255,0 3 209,146,365, 0,6055,11701, KRTAP9-2 cmpl cmpl 0,2,1, ENST00000615963.1 KRTAP9-2 +chr17_JH159148v1_alt 5040 5572 ENST00000576740.1 1000 + 5040 5040 0,255,0 1 532, 0, KRTAP9-12P none none -1, ENST00000576740.1 KRTAP9-12P +chr17_KI270857v1_alt 388 30168 ENST00000611911.1 1000 - 1031 29909 0,255,0 8 1038,168,150,246,225,188,80,370, 0,1895,2373,4210,7323,13031,13387,29410, MMP28 cmpl cmpl 1,1,1,1,1,2,0,0, ENST00000611911.1 MMP28 +chr17_KI270858v1_alt 36454 37124 ENST00000545441.2 1000 + 36568 36919 0,255,0 1 670, 0, AC006448.1 cmpl cmpl 0, ENST00000545441.2 AC006448.1 +chr17_KI270860v1_alt 6705 20196 ENST00000612762.1 1000 + 7835 19960 0,255,0 7 1219,78,90,88,110,85,251, 0,3233,7854,8632,10154,12187,13240, AC127518.1 cmpl cmpl 0,2,2,2,0,2,0, ENST00000612762.1 AC127518.1 +chr17_KI270861v1_alt 4431 34857 ENST00000382147.5 1000 - 5631 34857 0,255,0 10 1362,124,74,133,139,147,203,134,93,90, 0,2193,3846,8800,11509,16398,16865,17162,18783,30336, SLC43A2 cmpl cmpl 0,2,0,2,1,1,2,0,0,0, ENST00000382147.5 SLC43A2 +chr17_KI270862v1_alt 21282 21368 ENST00000612325.1 1000 + 21282 21282 0,255,0 1 86, 0, AC015884.3 none none -1, ENST00000612325.1 AC015884.3 +chr17_KI270907v1_alt 66288 68569 ENST00000617018.1 1000 + 66641 68292 0,255,0 3 517,67,430, 0,595,1851, AC129507.2 cmpl cmpl 0,2,0, ENST00000617018.1 AC129507.2 +chr17_KI270908v1_alt 17868 18000 ENST00000620796.1 1000 - 17868 17868 0,255,0 1 132, 0, 5S_rRNA none none -1, ENST00000620796.1 5S_rRNA +chr17_KI270909v1_alt 18379 25577 ENST00000615723.1 1000 + 18439 25138 0,255,0 3 127,112,530, 0,6164,6668, CCL18 cmpl cmpl 0,1,2, ENST00000615723.1 CCL18 +chr17_KI270910v1_alt 21282 21368 ENST00000616405.1 1000 + 21282 21282 0,255,0 1 86, 0, AC015884.2 none none -1, ENST00000616405.1 AC015884.2 +18 11190 15928 ENST00000572573.1 1000 + 11190 11190 0,255,0 3 405,203,312, 0,1961,4426, AP005530.1 none none -1,-1,-1, ENST00000572573.1 AP005530.1 +chr18_GL383567v1_alt 26808 26927 ENST00000576449.1 1000 + 26808 26808 0,255,0 1 119, 0, 5S_rRNA none none -1, ENST00000576449.1 5S_rRNA +chr18_GL383569v1_alt 50628 50722 ENST00000573043.2 1000 - 50628 50628 0,255,0 1 94, 0, Y_RNA none none -1, ENST00000573043.2 Y_RNA +chr18_GL383571v1_alt 127520 130693 ENST00000575446.1 1000 - 127520 127520 0,255,0 1 3173, 0, CTD-2541J13.1 none none -1, ENST00000575446.1 CTD-2541J13.1 +chr18_GL383572v1_alt 41669 43957 ENST00000570964.1 1000 - 41669 41669 0,255,0 2 875,380, 0,1908, RP11-849I19.1 none none -1,-1, ENST00000570964.1 RP11-849I19.1 +chr18_KI270911v1_alt 45389 62512 ENST00000612458.1 1000 + 45389 62437 0,255,0 5 82,179,1849,341,507, 0,11799,12782,14847,16616, SALL3 cmpl cmpl 0,1,0,1,0, ENST00000612458.1 SALL3 +chr18_KI270912v1_alt 50628 50722 ENST00000613040.1 1000 - 50628 50628 0,255,0 1 94, 0, Y_RNA none none -1, ENST00000613040.1 Y_RNA +19 60950 70966 ENST00000606728.2 1000 - 60950 60950 0,255,0 3 944,154,39, 0,5395,9977, WASH5P none none -1,-1,-1, ENST00000606728.2 WASH5P +chr19_GL000209v2_alt 2216 2529 ENST00000614716.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000614716.1 LILRP1 +chr19_GL383573v1_alt 11782 33393 ENST00000622720.1 1000 + 11782 11782 0,255,0 4 121,96,657,1300, 0,3702,16417,20311, CTD-2542C24.4 none none -1,-1,-1,-1, ENST00000622720.1 CTD-2542C24.4 +chr19_GL383574v1_alt 20187 77063 ENST00000575811.2 1000 + 20383 75132 0,255,0 10 317,164,130,123,177,66,183,172,232,1955, 0,22031,24187,36482,42677,43149,46945,47260,49061,54921, LSM14A cmpl cmpl 0,1,0,1,1,1,1,1,2,0, ENST00000575811.2 LSM14A +chr19_GL383575v2_alt 6864 8250 ENST00000340708.7 1000 + 6864 6864 0,255,0 1 1386, 0, RP11-420K14.1 none none -1, ENST00000340708.7 RP11-420K14.1 +chr19_GL383576v1_alt 7898 9474 ENST00000619010.1 1000 - 7898 7898 0,255,0 3 103,115,502, 0,591,1074, ZNF92P2 none none -1,-1,-1, ENST00000619010.1 ZNF92P2 +chr19_GL949746v1_alt 15199 27563 ENST00000614390.1 1000 - 15327 27563 0,255,0 8 248,38,38,28,93,39,82,9, 0,946,1083,1336,1444,10577,12066,12355, VSTM1 cmpl incmpl 0,1,2,1,1,1,0,0, ENST00000614390.1 VSTM1 +chr19_GL949747v2_alt 15199 27563 ENST00000619907.1 1000 - 15327 27563 0,255,0 8 248,38,38,28,93,39,82,9, 0,946,1083,1336,1444,10577,12066,12355, VSTM1 cmpl incmpl 0,1,2,1,1,1,0,0, ENST00000619907.1 VSTM1 +chr19_GL949748v2_alt 1614 1714 ENST00000612605.1 1000 - 1614 1614 0,255,0 1 100, 0, AC012314.1 none none -1, ENST00000612605.1 AC012314.1 +chr19_GL949749v2_alt 15199 27563 ENST00000618529.1 1000 - 15327 27563 0,255,0 8 248,38,38,28,93,39,82,9, 0,946,1083,1336,1444,10577,12066,12355, VSTM1 cmpl incmpl 0,1,2,1,1,1,0,0, ENST00000618529.1 VSTM1 +chr19_GL949750v2_alt 15199 27563 ENST00000613774.1 1000 - 15327 27563 0,255,0 8 248,38,38,28,93,39,82,9, 0,946,1083,1336,1444,10577,12066,12355, VSTM1 cmpl incmpl 0,1,2,1,1,1,0,0, ENST00000613774.1 VSTM1 +chr19_GL949751v2_alt 1614 1714 ENST00000616862.1 1000 - 1614 1614 0,255,0 1 100, 0, AC012314.2 none none -1, ENST00000616862.1 AC012314.2 +chr19_GL949752v1_alt 15199 27563 ENST00000613096.1 1000 - 15327 27563 0,255,0 8 248,38,38,28,93,39,82,9, 0,946,1083,1336,1444,10577,12066,12355, VSTM1 cmpl incmpl 0,1,2,1,1,1,0,0, ENST00000613096.1 VSTM1 +chr19_GL949753v2_alt 15199 27563 ENST00000613399.1 1000 - 15327 27563 0,255,0 8 248,38,38,28,93,39,82,9, 0,946,1083,1336,1444,10577,12066,12355, VSTM1 cmpl incmpl 0,1,2,1,1,1,0,0, ENST00000613399.1 VSTM1 +chr19_KI270865v1_alt 221 24860 ENST00000622719.1 1000 - 806 24783 0,255,0 29 1070,191,77,132,93,95,144,75,109,72,113,136,132,170,192,83,98,177,154,106,118,144,91,134,152,106,81,162,185, 0,1144,1500,1657,1871,2048,3110,3384,3871,4361,4554,4767,5183,5900,6596,8386,9194,9688,11376,11881,12271,14504,14833,15023,15259,15899,16307,19969,24454, SBNO2 cmpl cmpl 1,2,0,0,0,1,1,1,0,0,1,0,0,1,1,2,0,0,2,1,0,0,2,0,1,0,0,0,0, ENST00000622719.1 SBNO2 +chr19_KI270867v1_alt 49635 50314 ENST00000599541.2 1000 + 49635 50314 0,255,0 2 68,478, 0,201, AC243960.2 cmpl incmpl 0,2, ENST00000599541.2 AC243960.2 +chr19_KI270868v1_alt 6673 10860 ENST00000620695.1 1000 + 6689 10720 0,255,0 5 74,157,145,234,302, 0,399,1731,2877,3885, AZU1 cmpl cmpl 0,1,2,0,0, ENST00000620695.1 AZU1 +chr19_KI270882v1_alt 2216 2529 ENST00000613274.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000613274.1 LILRP1 +chr19_KI270883v1_alt 2216 2529 ENST00000612586.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000612586.1 LILRP1 +chr19_KI270884v1_alt 2216 2529 ENST00000622060.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000622060.1 LILRP1 +chr19_KI270885v1_alt 2216 2529 ENST00000615715.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000615715.1 LILRP1 +chr19_KI270886v1_alt 7854 7924 ENST00000610422.1 1000 + 7854 7854 0,255,0 1 70, 0, AC245128.4 none none -1, ENST00000610422.1 AC245128.4 +chr19_KI270887v1_alt 7854 7924 ENST00000619604.1 1000 + 7854 7854 0,255,0 1 70, 0, AC245128.2 none none -1, ENST00000619604.1 AC245128.2 +chr19_KI270888v1_alt 7851 7921 ENST00000615014.1 1000 + 7851 7851 0,255,0 1 70, 0, GU182353.2 none none -1, ENST00000615014.1 GU182353.2 +chr19_KI270889v1_alt 7854 7924 ENST00000622168.1 1000 + 7854 7854 0,255,0 1 70, 0, AC245128.10 none none -1, ENST00000622168.1 AC245128.10 +chr19_KI270890v1_alt 2216 2529 ENST00000615082.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000615082.1 LILRP1 +chr19_KI270891v1_alt 2216 2529 ENST00000613676.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000613676.1 LILRP1 +chr19_KI270914v1_alt 2216 2529 ENST00000613596.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000613596.1 LILRP1 +chr19_KI270915v1_alt 2216 2529 ENST00000619369.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000619369.1 LILRP1 +chr19_KI270916v1_alt 0 2529 ENST00000611813.1 1000 - 0 0 0,255,0 3 136,27,159, 0,2223,2370, LILRP1 none none -1,-1,-1, ENST00000611813.1 LILRP1 +chr19_KI270917v1_alt 3424 46797 ENST00000613343.1 1000 + 3462 46284 0,255,0 8 72,36,300,294,51,105,53,690, 0,14985,17458,19273,39379,41965,42532,42683, KIR2DL3 cmpl cmpl 0,1,1,1,1,1,1,0, ENST00000613343.1 KIR2DL3 +chr19_KI270918v1_alt 2216 2529 ENST00000617944.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000617944.1 LILRP1 +chr19_KI270919v1_alt 2216 2529 ENST00000616364.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000616364.1 LILRP1 +chr19_KI270920v1_alt 11326 23341 ENST00000622043.1 1000 + 11344 22901 0,255,0 8 52,36,285,300,294,105,53,566, 0,729,1535,3093,4971,10731,11298,11449, KIR3DL3 cmpl cmpl 0,1,1,1,1,1,1,0, ENST00000622043.1 KIR3DL3 +chr19_KI270921v1_alt 5070 5140 ENST00000617182.1 1000 + 5070 5070 0,255,0 1 70, 0, GU182339.1 none none -1, ENST00000617182.1 GU182339.1 +chr19_KI270922v1_alt 437 43798 ENST00000620925.1 1000 + 475 43285 0,255,0 8 72,36,300,294,51,105,53,690, 0,14985,17458,19273,39367,41953,42520,42671, KIR2DL3 cmpl cmpl 0,1,1,1,1,1,1,0, ENST00000620925.1 KIR2DL3 +chr19_KI270923v1_alt 25 4330 ENST00000620686.1 1000 + 25 25 0,255,0 5 312,297,303,51,245, 0,521,1071,3861,4060, LILRP2 none none -1,-1,-1,-1,-1, ENST00000620686.1 LILRP2 +chr19_KI270929v1_alt 229 10713 ENST00000617584.1 1000 + 229 10273 0,255,0 6 286,300,294,105,53,566, 0,1559,3441,9200,9767,9918, KIR3DL3 incmpl cmpl 0,1,1,1,1,0, ENST00000617584.1 KIR3DL3 +chr19_KI270930v1_alt 2216 2529 ENST00000619778.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000619778.1 LILRP1 +chr19_KI270931v1_alt 2216 2529 ENST00000617494.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000617494.1 LILRP1 +chr19_KI270932v1_alt 0 2730 ENST00000622251.1 1000 + 0 0 0,255,0 2 108,360, 0,2370, LILRP1 none none -1,-1, ENST00000622251.1 LILRP1 +chr19_KI270933v1_alt 2216 2529 ENST00000620500.1 1000 + 2216 2216 0,255,0 2 45,138, 0,175, LILRP1 none none -1,-1, ENST00000620500.1 LILRP1 +chr19_KI270938v1_alt 15199 38320 ENST00000620474.1 1000 - 15327 38144 0,255,0 9 248,38,38,28,93,39,285,36,210, 0,946,1083,1336,1444,10577,17473,17864,22911, VSTM1 cmpl cmpl 0,1,2,1,1,1,1,1,0, ENST00000620474.1 VSTM1 +chr1_GL383518v1_alt 128 426 ENST00000583838.2 1000 + 128 128 0,255,0 1 298, 0, Metazoa_SRP none none -1, ENST00000583838.2 Metazoa_SRP +chr1_GL383519v1_alt 797 3290 ENST00000574204.1 1000 - 797 797 0,255,0 7 240,173,134,142,187,88,27, 0,475,858,1323,1582,2010,2466, ABC13-48559800H2.2 none none -1,-1,-1,-1,-1,-1,-1, ENST00000574204.1 ABC13-48559800H2.2 +chr1_GL383520v2_alt 164627 182140 ENST00000573121.2 1000 - 164796 182055 0,255,0 3 343,101,167, 0,5858,17346, ATP6V1G3 cmpl cmpl 0,1,0, ENST00000573121.2 ATP6V1G3 +KI270706.1 45988 46061 ENST00000611371.1 1000 + 45988 45988 0,255,0 1 73, 0, MIR3118-2 none none -1, ENST00000611371.1 MIR3118-2 +KI270707.1 1648 1731 ENST00000618762.1 1000 - 1648 1648 0,255,0 1 83, 0, FP325342.2 none none -1, ENST00000618762.1 FP325342.2 +KI270708.1 73354 73437 ENST00000615514.1 1000 + 73354 73354 0,255,0 1 83, 0, AL137861.5 none none -1, ENST00000615514.1 AL137861.5 +KI270711.1 4611 24650 ENST00000614336.1 1000 - 6126 21127 0,255,0 16 1759,112,173,52,173,52,173,52,164,52,206,73,215,103,210,159, 0,2379,3205,3992,4753,5528,6299,7095,8189,12259,13615,14285,15395,16445,18321,19880, AC240274.1 cmpl incmpl 2,1,2,1,2,1,2,1,2,1,2,1,2,0,-1,-1, ENST00000614336.1 AC240274.1 +KI270713.1 21860 22024 ENST00000619109.1 1000 - 21860 21860 0,255,0 1 164, 0, U1 none none -1, ENST00000619109.1 U1 +KI270714.1 10308 10381 ENST00000615341.1 1000 + 10308 10308 0,255,0 1 73, 0, MIR3675 none none -1, ENST00000615341.1 MIR3675 +chr1_KI270759v1_alt 47981 66019 ENST00000615502.1 1000 + 61272 64969 0,255,0 4 239,534,119,295, 0,13156,16898,17743, AL359983.2 cmpl cmpl -1,0,0,-1, ENST00000615502.1 AL359983.2 +chr1_KI270761v1_alt 9554 10601 ENST00000621754.1 1000 + 9554 10601 0,255,0 1 1047, 0, OR2T4 cmpl cmpl 0, ENST00000621754.1 OR2T4 +chr1_KI270762v1_alt 27504 56715 ENST00000620687.1 1000 + 27778 56403 0,255,0 22 398,147,244,130,171,94,204,121,172,108,144,93,83,98,183,108,125,85,147,80,298,1604, 0,2161,3419,3868,8133,10592,10858,11283,12892,13445,14877,18541,19173,20292,20513,21187,22208,22429,22769,23326,25797,27607, PLCH2 cmpl cmpl 0,1,1,2,0,0,1,1,2,0,0,0,0,2,1,1,1,0,1,1,0,1, ENST00000620687.1 PLCH2 +chr1_KI270763v1_alt 93263 93367 ENST00000615132.1 1000 - 93263 93263 0,255,0 1 104, 0, U6 none none -1, ENST00000615132.1 U6 +chr1_KI270765v1_alt 35154 35316 ENST00000621107.1 1000 - 35154 35154 0,255,0 1 162, 0, U1 none none -1, ENST00000621107.1 U1 +chr1_KI270766v1_alt 18516 23141 ENST00000616664.1 1000 + 18526 23071 0,255,0 7 297,352,3,9,75,128,632, 0,683,1036,1043,1056,2116,3993, CR854858.4 cmpl cmpl 0,2,0,0,0,0,2, ENST00000616664.1 CR854858.4 +chr1_KI270892v1_alt 9554 10601 ENST00000622637.1 1000 + 9554 10601 0,255,0 1 1047, 0, OR2T4 cmpl cmpl 0, ENST00000622637.1 OR2T4 +2 38813 46385 ENST00000327669.4 1000 - 41607 46385 0,255,0 2 2814,946, 0,6626, FAM110C cmpl cmpl 1,0, ENST00000327669.4 FAM110C +20 87709 96533 ENST00000382410.2 1000 + 87709 96417 0,255,0 2 58,529, 0,8295, DEFB125 cmpl cmpl 0,1, ENST00000382410.2 DEFB125 +chr20_GL383577v2_alt 43506 43937 ENST00000574649.1 1000 - 43506 43506 0,255,0 1 431, 0, RP5-905G11.5 none none -1, ENST00000574649.1 RP5-905G11.5 +chr20_KI270869v1_alt 64116 64233 ENST00000618869.1 1000 - 64116 64116 0,255,0 1 117, 0, hsa-mir-1257 none none -1, ENST00000618869.1 hsa-mir-1257 +chr20_KI270870v1_alt 2754 3625 ENST00000615600.1 1000 + 2754 3625 0,255,0 2 349,404, 0,467, AL121581.1 incmpl incmpl 0,1, ENST00000615600.1 AL121581.1 +21 5022492 5040666 ENST00000612610.1 1000 + 5022679 5040616 0,255,0 7 201,41,351,291,165,36,82, 0,2516,3787,5442,9560,10915,18092, FP565260.3 cmpl cmpl 0,2,1,1,1,1,1, ENST00000612610.1 FP565260.3 +chr21_GL383579v2_alt 6977 14055 ENST00000572717.2 1000 + 6977 6977 0,255,0 5 103,56,139,135,193, 0,2320,5309,5527,6885, LINC00308 none none -1,-1,-1,-1,-1, ENST00000572717.2 LINC00308 +chr21_GL383580v2_alt 735 2780 ENST00000574159.2 1000 - 735 2590 0,255,0 2 129,533, 0,1512, PAXBP1 incmpl cmpl 1,0, ENST00000574159.2 PAXBP1 +chr21_GL383581v2_alt 5407 32093 ENST00000573079.2 1000 + 5407 31534 0,255,0 7 57,133,206,149,160,158,694, 0,4052,10644,16048,21341,21878,25992, IFNGR2 incmpl cmpl 1,1,2,1,0,1,0, ENST00000573079.2 IFNGR2 +chr21_KI270872v1_alt 20585 45829 ENST00000618495.1 1000 - 20815 27832 0,255,0 4 557,152,351,104, 0,767,7165,25140, SPATC1L cmpl cmpl 0,1,0,-1, ENST00000618495.1 SPATC1L +22 10736170 10736283 ENST00000615943.1 1000 - 10736170 10736170 0,255,0 1 113, 0, U2 none none -1, ENST00000615943.1 U2 +chr22_GL383582v2_alt 2039 6629 ENST00000571525.3 1000 + 2113 4407 0,255,0 3 260,141,1166, 0,2230,3424, SMDT1 cmpl cmpl 0,0,-1, ENST00000571525.3 SMDT1 +chr22_GL383583v2_alt 36933 40415 ENST00000576811.1 1000 + 36933 36933 0,255,0 2 86,592, 0,2890, CTA-150C2.13 none none -1,-1, ENST00000576811.1 CTA-150C2.13 +chr22_KB663609v1_alt 2035 6628 ENST00000607293.2 1000 + 2113 4407 0,255,0 3 264,141,1165, 0,2234,3428, SMDT1 cmpl cmpl 0,0,-1, ENST00000607293.2 SMDT1 +KI270731.1 10597 13001 ENST00000619792.1 1000 - 11287 12574 0,255,0 1 2404, 0, AC023491.2 incmpl cmpl 0, ENST00000619792.1 AC023491.2 +KI270733.1 117446 117524 ENST00000615878.1 1000 + 117446 117446 0,255,0 1 78, 0, AL353644.7 none none -1, ENST00000615878.1 AL353644.7 +KI270734.1 59710 60316 ENST00000615362.1 1000 + 59710 59710 0,255,0 2 468,135, 0,471, AC007325.2 none none -1,-1, ENST00000615362.1 AC007325.2 +chr22_KI270875v1_alt 7431 7897 ENST00000618026.1 1000 + 7431 7897 0,255,0 2 46,305, 0,161, AC009286.2 cmpl incmpl 0,1, ENST00000618026.1 AC009286.2 +chr22_KI270876v1_alt 32638 44250 ENST00000617827.1 1000 + 32638 43665 0,255,0 5 55,87,984,182,130, 0,2696,8339,10851,11482, AC239364.1 cmpl cmpl 0,1,1,1,-1, ENST00000617827.1 AC239364.1 +chr22_KI270877v1_alt 21490 40260 ENST00000620986.1 1000 - 21676 37792 0,255,0 5 215,110,133,68,43, 0,12942,14399,16241,18727, PVALB cmpl cmpl 1,2,1,0,-1, ENST00000620986.1 PVALB +chr22_KI270878v1_alt 108044 132865 ENST00000610688.1 1000 - 115440 132865 0,255,0 12 592,42,151,42,22,356,34,62,84,31,59,28, 0,5188,7250,7909,8228,8721,11291,11790,18331,20489,20982,24793, AP000344.1 cmpl cmpl -1,-1,1,1,0,1,0,1,1,0,1,0, ENST00000610688.1 AP000344.1 +chr22_KI270879v1_alt 840 1316 ENST00000614752.1 1000 + 895 1294 0,255,0 1 476, 0, C22ORF15 cmpl cmpl 0, ENST00000614752.1 C22ORF15 +chr22_KI270928v1_alt 2035 6628 ENST00000615504.1 1000 + 2113 4407 0,255,0 3 264,141,1165, 0,2234,3428, SMDT1 cmpl cmpl 0,0,-1, ENST00000615504.1 SMDT1 +chr2_GL383521v1_alt 73429 73872 ENST00000398929.3 1000 - 73429 73429 0,255,0 1 443, 0, AC009414.1 none none -1, ENST00000398929.3 AC009414.1 +chr2_GL383522v1_alt 1109 35154 ENST00000618893.1 1000 + 1109 34610 0,255,0 11 63,99,126,99,126,109,89,126,115,90,681, 0,2755,11520,19612,19807,23880,25221,28043,29327,30492,33364, NOSTRIN incmpl cmpl 0,0,0,0,0,0,1,0,0,1,1, ENST00000618893.1 NOSTRIN +chr2_KI270768v1_alt 54496 71130 ENST00000619425.1 1000 + 54521 71088 0,255,0 2 53,626, 0,16008, AC093724.1 cmpl cmpl 0,1, ENST00000619425.1 AC093724.1 +chr2_KI270769v1_alt 9897 89041 ENST00000618133.1 1000 + 9900 88931 0,255,0 10 99,114,139,113,73,74,99,101,88,353, 0,22043,24691,43350,57193,59835,65169,77267,78418,78791, AC216281.1 cmpl cmpl 0,0,0,1,0,1,0,0,2,0, ENST00000618133.1 AC216281.1 +chr2_KI270776v1_alt 11160 16264 ENST00000610560.1 1000 + 11160 16264 0,255,0 3 92,256,822, 0,2718,4282, AC131097.1 incmpl cmpl 0,2,0, ENST00000610560.1 AC131097.1 +chr2_KI270894v1_alt 41220 41729 ENST00000614332.1 1000 + 41220 41729 0,255,0 3 9,25,299, 0,10,210, AC145029.1 incmpl incmpl 0,0,1, ENST00000614332.1 AC145029.1 +3 23756 24501 ENST00000440867.1 1000 + 23756 23756 0,255,0 2 56,534, 0,211, AY269186.1 none none -1,-1, ENST00000440867.1 AY269186.1 +chr3_GL383526v1_alt 44984 45098 ENST00000576828.1 1000 + 44984 44984 0,255,0 1 114, 0, AC069067.2 none none -1, ENST00000576828.1 AC069067.2 +chr3_JH636055v2_alt 44405 78233 ENST00000581685.2 1000 + 44405 44405 0,255,0 17 94,108,36,144,135,132,111,110,65,120,74,147,101,116,109,115,110, 0,457,801,10786,12118,13582,15928,23125,23836,25263,25827,26200,27191,27661,29021,33336,33718, RP11-758G22.2 none none -1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1, ENST00000581685.2 RP11-758G22.2 +chr3_KI270777v1_alt 9432 149434 ENST00000618535.1 1000 + 10422 147080 0,255,0 15 233,1134,40,146,57,161,153,130,75,90,155,210,68,105,2497, 0,939,3407,8571,28386,31769,69861,73465,76818,100043,108030,122544,135290,136894,137505, ARHGEF26 cmpl cmpl -1,0,0,1,0,0,2,2,0,0,0,2,2,1,1, ENST00000618535.1 ARHGEF26 +chr3_KI270779v1_alt 58504 58617 ENST00000620036.1 1000 + 58504 58504 0,255,0 1 113, 0, AC233280.5 none none -1, ENST00000620036.1 AC233280.5 +chr3_KI270780v1_alt 24737 24825 ENST00000612752.1 1000 + 24737 24737 0,255,0 1 88, 0, AF186996.3 none none -1, ENST00000612752.1 AF186996.3 +chr3_KI270782v1_alt 81865 81978 ENST00000614485.1 1000 - 81865 81865 0,255,0 1 113, 0, AC231647.1 none none -1, ENST00000614485.1 AC231647.1 +chr3_KI270784v1_alt 23762 23869 ENST00000622163.1 1000 - 23762 23762 0,255,0 1 107, 0, U6 none none -1, ENST00000622163.1 U6 +chr3_KI270895v1_alt 58504 58617 ENST00000614897.1 1000 + 58504 58504 0,255,0 1 113, 0, AC233280.1 none none -1, ENST00000614897.1 AC233280.1 +chr3_KI270924v1_alt 58504 58617 ENST00000612380.1 1000 + 58504 58504 0,255,0 1 113, 0, AC233280.9 none none -1, ENST00000612380.1 AC233280.9 +chr3_KI270934v1_alt 58504 58617 ENST00000622806.1 1000 + 58504 58504 0,255,0 1 113, 0, AC233280.8 none none -1, ENST00000622806.1 AC233280.8 +chr3_KI270935v1_alt 58504 58617 ENST00000621397.1 1000 + 58504 58504 0,255,0 1 113, 0, AC233280.7 none none -1, ENST00000621397.1 AC233280.7 +chr3_KI270936v1_alt 58504 58617 ENST00000615293.1 1000 + 58504 58504 0,255,0 1 113, 0, AC233280.4 none none -1, ENST00000615293.1 AC233280.4 +chr3_KI270937v1_alt 58504 58617 ENST00000611752.1 1000 + 58504 58504 0,255,0 1 113, 0, AC233280.2 none none -1, ENST00000611752.1 AC233280.2 +4 49095 49956 ENST00000616656.1 1000 - 49095 49095 0,255,0 1 861, 0, BNIP3P41 none none -1, ENST00000616656.1 BNIP3P41 +GL000008.2 118090 118173 ENST00000622295.1 1000 + 118090 118090 0,255,0 1 83, 0, AL583842.1 none none -1, ENST00000622295.1 AL583842.1 +chr4_GL000257v2_alt 4028 43748 ENST00000613637.1 1000 - 7740 43395 0,255,0 16 3937,135,63,40,37,83,167,85,118,109,95,90,424,329,102,381, 0,5927,8132,8303,8439,9736,12362,13752,19615,19815,21716,22921,26640,27185,27896,39339, YTHDC1 cmpl cmpl 0,0,0,2,1,2,0,2,1,0,1,1,0,1,1,0, ENST00000613637.1 YTHDC1 +chr4_GL383527v1_alt 1311 30896 ENST00000572394.2 1000 - 1311 30849 0,255,0 8 169,57,148,150,126,238,307,87, 0,2124,5518,6992,15502,17388,26759,29498, ACCN5 incmpl cmpl 1,1,0,0,0,2,1,0, ENST00000572394.2 ACCN5 +chr4_GL383528v1_alt 150811 151478 ENST00000572477.1 1000 + 150811 150811 0,255,0 2 64,235, 0,432, RP11-725M22.1 none none -1,-1, ENST00000572477.1 RP11-725M22.1 +chr4_KI270786v1_alt 43091 43267 ENST00000611407.1 1000 - 43091 43091 0,255,0 1 176, 0, U1 none none -1, ENST00000611407.1 U1 +chr4_KI270789v1_alt 123028 123136 ENST00000618954.1 1000 - 123028 123028 0,255,0 1 108, 0, AC093789.1 none none -1, ENST00000618954.1 AC093789.1 +chr4_KI270896v1_alt 43091 43267 ENST00000612437.1 1000 - 43091 43091 0,255,0 1 176, 0, U1 none none -1, ENST00000612437.1 U1 +chr4_KI270925v1_alt 358267 358443 ENST00000611896.1 1000 - 358267 358267 0,255,0 1 176, 0, U1 none none -1, ENST00000611896.1 U1 +5 58197 58915 ENST00000506872.1 1000 + 58197 58197 0,255,0 1 718, 0, RP11-811I15.1 none none -1, ENST00000506872.1 RP11-811I15.1 +chr5_GL339449v2_alt 941 13309 ENST00000613100.1 1000 + 1011 12405 0,255,0 4 112,64,188,922, 0,8578,10440,11446, MRPS36 cmpl cmpl 0,0,1,0, ENST00000613100.1 MRPS36 +chr5_GL383531v1_alt 50711 53679 ENST00000571196.1 1000 - 50711 50711 0,255,0 2 560,40, 0,2928, RP11-96G10.1 none none -1,-1, ENST00000571196.1 RP11-96G10.1 +chr5_GL383532v1_alt 5125 50017 ENST00000614956.1 1000 + 5125 5125 0,255,0 2 93,102, 0,44790, LINC01194 none none -1,-1, ENST00000614956.1 LINC01194 +chr5_GL949742v1_alt 42886 43001 ENST00000611262.1 1000 + 42886 42886 0,255,0 1 115, 0, SNORA18 none none -1, ENST00000611262.1 SNORA18 +chr5_KI270791v1_alt 70 26543 ENST00000620010.1 1000 - 70 26543 0,255,0 17 85,116,45,56,35,83,51,66,104,85,95,118,79,146,190,101,162, 0,2247,3266,3395,4508,5418,6394,7382,11911,13430,15920,16688,19535,20491,23302,25982,26311, CLPTM1L cmpl cmpl 2,0,0,1,2,0,0,0,1,0,1,0,2,0,2,0,0, ENST00000620010.1 CLPTM1L +chr5_KI270792v1_alt 27468 57319 ENST00000610777.1 1000 + 27564 56175 0,255,0 11 121,36,80,61,128,96,148,85,128,179,1008, 0,217,519,23190,24410,25273,25794,26427,27295,28558,28843, NKD2 cmpl cmpl 0,1,1,0,1,0,0,1,2,1,-1, ENST00000610777.1 NKD2 +chr5_KI270793v1_alt 33405 33448 ENST00000619028.1 1000 - 33405 33405 0,255,0 1 43, 0, MIR4456 none none -1, ENST00000619028.1 MIR4456 +chr5_KI270794v1_alt 89375 89482 ENST00000410416.2 1000 - 89375 89375 0,255,0 1 107, 0, U6 none none -1, ENST00000410416.2 U6 +chr5_KI270795v1_alt 10130 18366 ENST00000622006.1 1000 + 10130 18366 0,255,0 7 153,111,157,205,162,101,164, 0,155,937,3049,6774,7057,8072, AC106795.3 cmpl cmpl 0,0,0,1,2,2,1, ENST00000622006.1 AC106795.3 +chr5_KI270796v1_alt 15943 16028 ENST00000620119.1 1000 + 15943 15943 0,255,0 1 85, 0, AC109471.2 none none -1, ENST00000620119.1 AC109471.2 +chr5_KI270897v1_alt 80587 204323 ENST00000622284.1 1000 + 80706 141189 0,255,0 8 168,188,85,175,136,93,115,859, 0,54790,58578,60501,65148,65568,120152,122877, GUSBP1 cmpl cmpl 0,1,0,1,-1,-1,-1,-1, ENST00000622284.1 GUSBP1 +chr5_KI270898v1_alt 10130 18366 ENST00000613037.1 1000 + 10130 18366 0,255,0 7 153,111,157,205,162,101,164, 0,155,937,3049,6774,7057,8072, AC106795.5 cmpl cmpl 0,0,0,1,2,2,1, ENST00000613037.1 AC106795.5 +6 95123 95454 ENST00000604449.1 1000 + 95123 95123 0,255,0 1 331, 0, RP1-24O22.5 none none -1, ENST00000604449.1 RP1-24O22.5 +chr6_GL000250v2_alt 49217 49589 ENST00000609550.1 1000 - 49217 49217 0,255,0 1 372, 0, NOP56P1 none none -1, ENST00000609550.1 NOP56P1 +chr6_GL000251v2_alt 15892 24832 ENST00000550775.2 1000 + 15894 24048 0,255,0 5 89,154,118,100,991, 0,3439,5766,6309,7949, HEL-S-75P cmpl cmpl 0,0,1,2,0, ENST00000550775.2 HEL-S-75P +chr6_GL000252v2_alt 49225 49597 ENST00000441789.1 1000 - 49225 49225 0,255,0 1 372, 0, NOP56P1 none none -1, ENST00000441789.1 NOP56P1 +chr6_GL000253v2_alt 49215 49587 ENST00000597633.1 1000 - 49215 49215 0,255,0 1 372, 0, NOP56P1 none none -1, ENST00000597633.1 NOP56P1 +chr6_GL000254v2_alt 103466 104604 ENST00000436208.1 1000 - 103466 103466 0,255,0 2 452,257, 0,881, XXbac-BPG308K3.5 none none -1,-1, ENST00000436208.1 XXbac-BPG308K3.5 +chr6_GL000255v2_alt 49223 49595 ENST00000609133.1 1000 - 49223 49223 0,255,0 1 372, 0, NOP56P1 none none -1, ENST00000609133.1 NOP56P1 +chr6_GL000256v2_alt 41352 42240 ENST00000507015.1 1000 + 41352 41352 0,255,0 1 888, 0, RPSAP2 none none -1, ENST00000507015.1 RPSAP2 +chr6_GL383533v1_alt 4435 4706 ENST00000617011.1 1000 - 4435 4435 0,255,0 1 271, 0, RP1-232L24.2 none none -1, ENST00000617011.1 RP1-232L24.2 +chr6_KI270758v1_alt 17504 29920 ENST00000613156.1 1000 - 17504 29920 0,255,0 6 290,348,21,282,348,79, 0,1303,7078,8226,10230,12337, AC226007.1 cmpl cmpl 1,1,1,1,1,0, ENST00000613156.1 AC226007.1 +chr6_KI270797v1_alt 15320 26744 ENST00000610291.1 1000 - 15386 26660 0,255,0 4 177,159,207,204, 0,2961,3949,11220, TCTE3 cmpl cmpl 0,0,0,0, ENST00000610291.1 TCTE3 +chr6_KI270798v1_alt 9447 17847 ENST00000616526.1 1000 - 10111 17377 0,255,0 11 670,118,799,217,170,131,61,258,61,297,524, 0,778,1021,2709,3044,3359,4028,6029,6519,7302,7876, DLL1 cmpl cmpl 0,2,1,0,1,2,1,1,0,0,0, ENST00000616526.1 DLL1 +chr6_KI270800v1_alt 62119 63241 ENST00000444694.2 1000 - 62119 62119 0,255,0 1 1122, 0, AC216138.1 none none -1, ENST00000444694.2 AC216138.1 +chr6_KI270801v1_alt 53391 246279 ENST00000613862.1 1000 - 55182 246130 0,255,0 6 1823,136,1049,459,159,240, 0,11494,104689,121282,146836,192648, THEMIS cmpl cmpl 1,0,1,1,1,0, ENST00000613862.1 THEMIS +7 37031 37477 ENST00000615488.1 1000 + 37031 37031 0,255,0 1 446, 0, ABC7-481722F1.1 none none -1, ENST00000615488.1 ABC7-481722F1.1 +chr7_GL383534v2_alt 492 21836 ENST00000575872.2 1000 + 492 19516 0,255,0 7 80,58,151,98,71,85,2458, 0,3059,7347,7910,15362,17624,18886, AGK incmpl cmpl 0,2,0,1,0,2,0, ENST00000575872.2 AGK +chr7_KI270803v1_alt 73633 105811 ENST00000622623.1 1000 + 78753 105780 0,255,0 13 54,106,80,124,110,155,172,100,113,126,132,99,163, 0,5120,8548,19194,19764,20177,22227,24787,25679,26788,29048,29267,32015, AC091742.1 cmpl cmpl -1,0,1,0,1,0,2,0,1,0,0,0,0, ENST00000622623.1 AC091742.1 +chr7_KI270806v1_alt 13013 62564 ENST00000611100.1 1000 - 16866 42214 0,255,0 6 3547,131,115,647,310,312, 0,3848,15484,20001,28907,49239, NAPEPLD cmpl cmpl -1,0,2,0,0,-1, ENST00000611100.1 NAPEPLD +chr7_KI270808v1_alt 124587 204589 ENST00000613345.1 1000 + 165504 199211 0,255,0 4 173,240,81,5578, 0,40723,68582,74424, AC237044.1 cmpl cmpl -1,0,1,1, ENST00000613345.1 AC237044.1 +chr7_KI270809v1_alt 9514 14758 ENST00000448265.4 1000 + 9739 14338 0,255,0 4 625,226,130,627, 0,1229,3520,4617, UPK3B cmpl cmpl 0,1,2,0, ENST00000448265.4 UPK3B +8 64090 64320 ENST00000520139.2 1000 - 64090 64090 0,255,0 2 85,52, 0,178, AC144568.4 none none -1,-1, ENST00000520139.2 AC144568.4 +chr8_KI270810v1_alt 268468 268553 ENST00000610614.1 1000 + 268468 268468 0,255,0 1 85, 0, AC011198.1 none none -1, ENST00000610614.1 AC011198.1 +chr8_KI270811v1_alt 96109 96202 ENST00000620363.1 1000 - 96109 96109 0,255,0 1 93, 0, AC131901.1 none none -1, ENST00000620363.1 AC131901.1 +chr8_KI270813v1_alt 24048 25641 ENST00000612347.1 1000 + 24048 24048 0,255,0 2 798,792, 0,801, AF252830.3 none none -1,-1, ENST00000612347.1 AF252830.3 +chr8_KI270814v1_alt 10283 10370 ENST00000620206.1 1000 + 10283 10283 0,255,0 1 87, 0, AC025674.2 none none -1, ENST00000620206.1 AC025674.2 +chr8_KI270815v1_alt 81778 82763 ENST00000601863.2 1000 + 81778 82763 0,255,0 4 150,360,42,138, 0,364,804,847, AF186192.2 incmpl cmpl 0,0,0,0, ENST00000601863.2 AF186192.2 +chr8_KI270816v1_alt 32149 32438 ENST00000615817.1 1000 + 32149 32149 0,255,0 1 289, 0, 7SK none none -1, ENST00000615817.1 7SK +chr8_KI270817v1_alt 8772 12698 ENST00000619718.1 1000 + 11227 12077 0,255,0 4 102,109,120,845, 0,2398,2829,3081, LY6E cmpl cmpl -1,0,1,1, ENST00000619718.1 LY6E +chr8_KI270819v1_alt 23038 33819 ENST00000613887.1 1000 - 23400 24477 0,255,0 2 1463,65, 0,10716, GPR20 cmpl cmpl 0,-1, ENST00000613887.1 GPR20 +chr8_KI270821v1_alt 606 683 ENST00000617709.1 1000 + 606 606 0,255,0 1 77, 0, hsa-mir-596 none none -1, ENST00000617709.1 hsa-mir-596 +chr8_KI270822v1_alt 13213 190631 ENST00000615420.1 1000 + 13458 190514 0,255,0 25 303,80,62,76,77,172,69,72,167,82,137,181,93,199,109,184,84,103,157,39,39,39,39,39,124, 0,10555,29126,39599,42260,43846,53366,57230,57496,62386,79382,103621,114104,115534,124528,126400,138584,146914,149683,163361,166803,168319,173636,176086,177294, AC245594.1 cmpl cmpl 0,1,0,2,0,2,0,0,0,2,0,2,0,0,1,2,0,0,1,2,2,2,2,2,2, ENST00000615420.1 AC245594.1 +chr8_KI270900v1_alt 112162 317741 ENST00000620101.1 1000 + 159569 310673 0,255,0 12 66,1058,212,148,220,350,42,86,416,92,153,7287, 0,47405,63330,124598,130373,165416,166831,173622,175303,188639,194251,198292, AF181898.1 incmpl cmpl -1,0,0,2,0,1,0,0,2,1,0,0, ENST00000620101.1 AF181898.1 +chr8_KI270926v1_alt 176361 199219 ENST00000619400.1 1000 + 183712 193225 0,255,0 3 182,666,6312, 0,7228,16546, CLN8 cmpl cmpl -1,0,0, ENST00000619400.1 CLN8 +9 12133 13783 ENST00000421620.2 1000 + 12133 12133 0,255,0 6 57,50,109,70,150,218, 0,157,592,954,1204,1432, DDX11L5 none none -1,-1,-1,-1,-1,-1, ENST00000421620.2 DDX11L5 +chr9_GL383539v1_alt 62863 64139 ENST00000571381.1 1000 - 62863 62863 0,255,0 1 1276, 0, RPL4P5 none none -1, ENST00000571381.1 RPL4P5 +chr9_GL383540v1_alt 3731 70597 ENST00000617471.1 1000 - 4770 70597 0,255,0 11 1111,141,120,213,180,186,87,33,146,40,96, 0,2248,31718,40306,42844,46969,47775,48878,58545,62378,66770, APBA1 cmpl incmpl 0,0,0,0,0,0,0,0,1,0,0, ENST00000617471.1 APBA1 +chr9_GL383541v1_alt 19468 152599 ENST00000617216.1 1000 + 19468 19468 0,255,0 11 651,114,272,85,138,257,94,141,266,94,153, 0,1003,64630,66139,69414,82578,87938,96564,99970,131203,132978, MAMDC2 none none -1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1, ENST00000617216.1 MAMDC2 +chr9_GL383542v1_alt 1622 2363 ENST00000621502.1 1000 + 1622 1622 0,255,0 1 741, 0, RP11-1E11.1 none none -1, ENST00000621502.1 RP11-1E11.1 +chr9_KI270823v1_alt 79951 376337 ENST00000611695.1 1000 + 236697 375260 0,255,0 8 354,108,189,133,251,177,132,1110, 0,156701,241131,257355,280462,284049,288616,295276, LPPR1 cmpl cmpl -1,0,0,0,1,0,0,0, ENST00000611695.1 LPPR1 +MT 576 647 ENST00000387314.1 1000 + 576 576 0,255,0 1 71, 0, MT-TF none none -1, ENST00000387314.1 MT-TF +GL000195.1 37433 37534 ENST00000618679.1 1000 - 37433 37433 0,255,0 1 101, 0, Y_RNA none none -1, ENST00000618679.1 Y_RNA +GL000213.1 25282 25368 ENST00000621528.1 1000 - 25282 25282 0,255,0 1 86, 0, MIR8069 none none -1, ENST00000621528.1 MIR8069 +GL000216.2 93196 93309 ENST00000611062.1 1000 - 93196 93196 0,255,0 1 113, 0, U2 none none -1, ENST00000611062.1 U2 +GL000218.1 51866 54893 ENST00000612565.1 1000 - 53482 54214 0,255,0 1 3027, 0, AL354822.1 cmpl cmpl 0, ENST00000612565.1 AL354822.1 +GL000219.1 47190 47266 ENST00000612537.1 1000 - 47190 47190 0,255,0 1 76, 0, AL592183.3 none none -1, ENST00000612537.1 AL592183.3 +GL000220.1 100713 100791 ENST00000612604.1 1000 + 100713 100713 0,255,0 1 78, 0, AL592188.5 none none -1, ENST00000612604.1 AL592188.5 +GL000224.1 38210 38291 ENST00000614235.1 1000 + 38210 38210 0,255,0 1 81, 0, AL591856.5 none none -1, ENST00000614235.1 AL591856.5 +KI270442.1 217249 217401 ENST00000611690.1 1000 - 217249 217249 0,255,0 1 152, 0, 5_8S_rRNA none none -1, ENST00000611690.1 5_8S_rRNA +KI270741.1 68655 68737 ENST00000619975.1 1000 - 68655 68655 0,255,0 1 82, 0, AUXG01000515.1 none none -1, ENST00000619975.1 AUXG01000515.1 +KI270743.1 102971 103054 ENST00000621468.1 1000 + 102971 102971 0,255,0 1 83, 0, AC138775.5 none none -1, ENST00000621468.1 AC138775.5 +KI270744.1 51008 51114 ENST00000616830.1 1000 - 51008 51008 0,255,0 1 106, 0, U6 none none -1, ENST00000616830.1 U6 +KI270750.1 148667 148843 ENST00000612925.1 1000 + 148667 148667 0,255,0 1 176, 0, U1 none none -1, ENST00000612925.1 U1 +KI270752.1 143 268 ENST00000618580.1 1000 + 143 143 0,255,0 1 125, 0, AF065393.4 none none -1, ENST00000618580.1 AF065393.4 +X 253742 255091 ENST00000431238.3 1000 + 253742 253742 0,255,0 2 104,155, 0,1194, LL0YNC03-29C1.1 none none -1,-1, ENST00000431238.3 LL0YNC03-29C1.1 +chrX_KI270880v1_alt 17129 70308 ENST00000620224.1 1000 - 17562 70044 0,255,0 13 584,107,119,176,90,49,157,87,75,103,104,186,588, 0,4670,4844,6808,7350,7926,11532,12190,12717,13250,13606,27628,52591, BX000476.1 cmpl cmpl 2,0,1,2,2,1,0,0,0,2,0,0,0, ENST00000620224.1 BX000476.1 +chrX_KI270881v1_alt 61879 78893 ENST00000619509.1 1000 + 69393 78235 0,255,0 9 132,177,181,102,175,165,65,86,1272, 0,7512,8304,9307,10847,11948,12500,13235,15742, TBX22 cmpl cmpl -1,0,1,2,2,0,0,2,1, ENST00000619509.1 TBX22 +chrX_KI270913v1_alt 6753 59448 ENST00000612937.1 1000 - 7186 59184 0,255,0 13 584,107,119,176,90,49,157,87,75,103,104,186,588, 0,4672,4846,6997,7500,8075,11275,11940,12467,12968,13324,27144,52107, DKFZP434G155 cmpl cmpl 2,0,1,2,2,1,0,0,0,2,0,0,0, ENST00000612937.1 DKFZP434G155 +Y 253742 255091 ENST00000431238.3 1000 + 253742 253742 0,255,0 2 104,155, 0,1194, LL0YNC03-29C1.1 none none -1,-1, ENST00000431238.3 LL0YNC03-29C1.1