c924092bcdeb2b5e1b8e10f260854fa4ca9ac9c2
braney
  Sat Feb 12 13:14:03 2022 -0800
a little clean-up of the doc

diff --git src/hg/makeDb/doc/hg38/mane.txt src/hg/makeDb/doc/hg38/mane.txt
index 32af7d2..70415fe 100644
--- src/hg/makeDb/doc/hg38/mane.txt
+++ src/hg/makeDb/doc/hg38/mane.txt
@@ -1,15 +1,17 @@
-#DONE braney 2021-09-09
+#DONE braney 2022-02-12
 
-mkdir /cluster/data/hg38/bed/mane.1.0
+mkdir -p /cluster/data/hg38/bed/mane.1.0
 cd /cluster/data/hg38/bed/mane.1.0
 
 bigBedToBed https://ftp.ncbi.nlm.nih.gov/refseq/MANE/trackhub/data/release_1.0/MANE.GRCh38.v1.0.ensembl.bb our.bed
 
 bedToBigBed -extraIndex=name our.bed /cluster/data/hg38/chrom.sizes our.bb -type=bed12+13 -as=$HOME/kent/src/hg/lib/mane.as -tab
 mkdir -p /gbdb/hg38/mane
+rm -f /gbdb/hg38/mane/mane.1.0.bb
 ln -s `pwd`/our.bb /gbdb/hg38/mane/mane.1.0.bb
 
 tawk '{print $13, $18, $19, $21, $22, $23, $24}' our.bed > our.ixInput
 ixIxx our.ixInput mane.1.0.ix mane.1.0.ixx
+rm -f /gbdb/hg38/mane/mane.1.0.ix /gbdb/hg38/mane/mane.1.0.ixx
 ln -s `pwd`/mane.1.0.ix /gbdb/hg38/mane
 ln -s `pwd`/mane.1.0.ixx /gbdb/hg38/mane