ed45c0f09ccc43f2505d050349e02d4252928e3f lrnassar Thu Feb 3 16:30:54 2022 -0800 Tweaking wording for OMIM disclaimer based on CR feedback, refs #28856 diff --git src/hg/makeDb/trackDb/human/omimLocation.html src/hg/makeDb/trackDb/human/omimLocation.html index 8de8898..27011c3 100644 --- src/hg/makeDb/trackDb/human/omimLocation.html +++ src/hg/makeDb/trackDb/human/omimLocation.html @@ -41,31 +41,31 @@ <LI>The data file <TT>genemap.txt</TT> from OMIM was loaded into the MySQL table <TT>omimGeneMap</TT>. <LI>Entries in <TT>genemap.txt</TT> having disorder info were parsed and loaded into the <TT>omimPhenotype</TT> table. The phenotype map keys (the numbers (1)(2)(3)(4) from the disorder columns) were placed into a separate field. <LI>The cytogenetic location data (from the location column in <TT>omimGeneMap</TT>) were parsed and converted into genomic start and end positions based on the <TT>cytoBand</TT> table. These genomic positions, together with the corresponding OMIM IDs, were loaded into the <TT>omimLocation</TT> table. <LI>All entries with no associated phenotype map key and all OMIM gene entries as reported in the "OMIM Genes" track were then excluded from the <TT>omimLocation</TT> table. </UL> <h2>Data Access</h2> <p> -Since OMIM has only allowed Data queries within individual chromosomes, no download files are +Because OMIM has only allowed Data queries within individual chromosomes, no download files are available from the Genome Browser. Full genome datasets can be downloaded directly from the <a href="https://omim.org/downloads/" target="_blank">OMIM Downloads page</a>. All genome-wide downloads are freely available from OMIM after registration.</p> <p> If you need the OMIM data in exactly the format of the UCSC Genome Browser, for example if you are running a UCSC Genome Browser local installation (a partial "mirror"), please create a user account on omim.org and contact OMIM via <a href="https://omim.org/contact" target="_blank">https://omim.org/contact</a>. Send them your OMIM account name and request access to the UCSC Genome Browser 'entitlement'. They will then grant you access to a MySQL/MariaDB data dump that contains all UCSC Genome Browser OMIM tables.</p> <p> UCSC offers queries within chromosomes from <a href="hgTables" target=_blank>Table Browser</a> that include a variety of filtering options and cross-referencing other datasets using our