Commits for markd

v427_preview to v427_preview2 (2022-02-07 to 2022-02-14) v427

98392a8bfe02501cabf97a1d1267bd97378a38e0 Wed Feb 9 20:06:41 2022 -0800

• simplify file location tracking
  • src/hg/makeDb/outside/gencode/bin/gencodeGenerateTrackDbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/lib/gencode/gencodeGff3Parser.py - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/lib/gencode/gencodeGtfParser.py - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/lib/gencode/gencodeGxfParser.py - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/lib/gencode/gencodeGxfRec.py - lines changed 5, context: html, text, full: html, text

54691f7b728b08d1a095a5ccfd39e30e502d68cc Wed Feb 9 21:26:48 2022 -0800

• improve checking and reporting of GENCODE attribute errors
  • src/hg/makeDb/outside/gencode/bin/gencodeGxfToAttrs - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/bin/gencodeGxfToGenePred - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/lib/gencode/gencodeGxfParser.py - lines changed 43, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/tests/expected/attrsErrorGff3Test.err - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/tests/expected/attrsErrorGtfTest.err - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/tests/input/attrErrors.gff3 - lines changed 931, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/tests/input/attrErrors.gtf - lines changed 940, context: html, text, full: html, text
  • src/hg/makeDb/outside/gencode/tests/makefile - lines changed 12, context: html, text, full: html, text