Commits for braney

v428_preview2 to v428_base (2022-03-07 to 2022-03-14) v428

7df99795b147931dfea8220ed5ab305d11fde6b4 Thu Mar 10 15:41:46 2022 -0800

• move some chromAlias stuff around so bedToBigBed can use a chromAlias bigBed as a chromAlias file.
  • src/hg/lib/chromAlias.c - lines changed 81, context: html, text, full: html, text
  • src/inc/bbiAlias.h - lines changed 23, context: html, text, full: html, text
  • src/inc/bbiFile.h - lines changed 7, context: html, text, full: html, text
  • src/lib/bbiAlias.c - lines changed 88, context: html, text, full: html, text
  • src/lib/bbiWrite.c - lines changed 24, context: html, text, full: html, text
  • src/lib/makefile - lines changed 1, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 47, context: html, text, full: html, text

e63eaf218669b968f124b81ca45ea0c287943f75 Fri Mar 11 16:26:26 2022 -0800

• use bpt index if available for 2bit assembly hubs
  • src/hg/inc/trackHub.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 14, context: html, text, full: html, text
  • src/index/bptForTwoBit/bptForTwoBit.c - lines changed 3, context: html, text, full: html, text
  • src/lib/twoBit.c - lines changed 10, context: html, text, full: html, text