1049c9c012c170c8ae3f2d7ebcbfa5019356b551 dschmelt Fri Mar 11 12:20:43 2022 -0800 Adding SNP/CNV array track refs #23591 diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt index 2b13b72..4d1954e 100644 --- src/hg/makeDb/doc/hg19.txt +++ src/hg/makeDb/doc/hg19.txt @@ -34724,35 +34724,40 @@ ls -lh ls -lh /gbdb/hg19/jaspar ############################################################################### # JASPAR 2022 bigBed update 1/3/22 cd /hive/data/genomes/hg19/bed/jaspar wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2022/JASPAR2022_hg19.bb rm JASPAR2022.bb mv JASPAR2022_hg19.bb JASPAR2022.bb ls -lh ls -lh /gbdb/hg19/jaspar ################################################### -# PanelApp refs #25568 +# PanelApp refs #25568 3/10/22 cd /hive/data/genomes/hg19/bed mkdir panelApp cd panelApp wget https://hgwdev.gi.ucsc.edu/~bnguy/panel/hg19/panel_hg19.bb wget https://hgwdev.gi.ucsc.edu/~bnguy/panel/hg19/str_hg19.bb mv panel_hg19.bb genesPanel.bb mv str_hg19.bb STRsPanel.bb cd /gbdb/hg19 mkdir panelApp cd panelApp ln -s /hive/data/genomes/hg19/bed/panelApp/genesPanel.bb ln -s /hive/data/genomes/hg19/bed/panelApp/STRsPanel.bb cd ~/kent/src/hg/makeDb/trackDb/human/hg19 wget https://hgwdev.gi.ucsc.edu/~bnguy/panel/hg19/panelapp.html cd ~/kent/src/hg/makeDb/trackDb mv human/hg19/panelapp.html human/hg19/panelApp.html curl https://hgwdev.gi.ucsc.edu/~bnguy/panel/hg19/trackDb.txt >> trackDb.ra vi trackDb.ra make alpha DBS=hg19 + +############################################### + +#Probe and Microarray data sets addition 3/11/21 +