c80188a28d8286a54322364ea43a40aa13739f4b
kuhn
  Wed Mar 9 07:44:50 2022 -0800
modified file to standardize btw new canFam and mm39 to include VAI fields, per collab w Lou

diff --git src/hg/lib/evaSnp.as src/hg/lib/evaSnp.as
index 8f09375..4a815d9 100644
--- src/hg/lib/evaSnp.as
+++ src/hg/lib/evaSnp.as
@@ -1,15 +1,19 @@
 table evaSnp
 "Variant data from EVA VCF files"
     (
     string   chrom;      "Reference sequence chromosome or scaffold"
     uint     chromStart; "Start position in chrom"
     uint     chromEnd;   "End position in chrom"
     string   name;       "Reference SNP identifier"
     uint     score;      "Not used"
     char[1]  strand;     "Which DNA strand contains the observed alleles"
-    string  ref;        "The sequence of the reference allele"
-    string  alt;        "The sequences of the alternate alleles"
-    string  class;      "The class of variant"
-    string  submitters; "Source of the data"
-    string  valid;      "The rs_validation status of the SNP"
+    uint     thickStart; "Same as chromStart"
+    uint     thickEnd;   "Same as chromEnd"
+    uint     itemRgb;    "RGB value for color of item"
+    lstring  ref;        "The sequence of the reference allele"
+    lstring  alt;        "The sequences of the alternate alleles"
+    string   varClass;   "The variant class (VC) from EVA Sequence Ontology term"
+    lstring  submitters; "Submitter ID (SID) reporting a variant"
+    string   aaChange;   "Change in amino acid"
+    string   ucscClass;  "Class of variant per UCSC Variant Annotation Integrator"
     )