0192d4b02dfdb61e29f71ab65340876d95d7af7a
markd
  Sat Mar 12 23:32:19 2022 -0800
have pslToBigPsl check for FASTA sequence length not matching PSL instead of having browser generate an error

diff --git src/hg/utils/pslToBigPsl/pslToBigPsl.c src/hg/utils/pslToBigPsl/pslToBigPsl.c
index 671f58b..c1ed5e9 100644
--- src/hg/utils/pslToBigPsl/pslToBigPsl.c
+++ src/hg/utils/pslToBigPsl/pslToBigPsl.c
@@ -109,30 +109,32 @@
 int mult = pslIsProtein(psl) ? 3 : 1;
 for(ii=0; ii < bigPsl.blockCount; ii++)
     {
     blockStarts[ii] = psl->tStarts[ii] - bigPsl.chromStart;
     oBlockStarts[ii] = psl->qStarts[ii] ;
     blockSizes[ii] = psl->blockSizes[ii] * mult;
     }
     
 bigPsl.seqType = PSL_SEQTYPE_EMPTY;
 if (fastaHash)
     {
     struct dnaSeq *seq = hashFindVal(fastaHash, psl->qName);
 
     if (seq != NULL)
         {
+        if (seq->size != psl->qSize)
+            errAbort("%s FASTA sequence length (%d) does not match PSL qSize (%d)", psl->qName, seq->size, psl->qSize);
 	bigPsl.oSequence = seq->dna;
         bigPsl.seqType = isProt ? PSL_SEQTYPE_PROTEIN : PSL_SEQTYPE_NUCLEOTIDE;
         }
     else
 	{
 	warn("Cannot find sequence for %s. Dropping", psl->qName);
 	return;
 	}
     }
 
 if (cdsHash)
     {
     char *cds = hashFindVal(cdsHash, psl->qName);
 
     if (cds != NULL)