f39d46885edb7bfab12a10158d13895a5010d2ff markd Sun Mar 13 11:21:26 2022 -0700 fixed shell check for command that should have failed diff --git src/hg/utils/pslToBigPsl/tests/makefile src/hg/utils/pslToBigPsl/tests/makefile index 27f6c6c..f817b95 100644 --- src/hg/utils/pslToBigPsl/tests/makefile +++ src/hg/utils/pslToBigPsl/tests/makefile @@ -16,22 +16,22 @@ singleStrand: mkout ${pslToBigPsl} input/$@.psl output/$@.tmp sort -k1,1 -k2,2n output/$@.tmp > output/$@.bigPslInput ${bedToBigBed} -type=bed12+12 -tab -as=${kentSrc}/hg/lib/bigPsl.as output/$@.bigPslInput input/chrom.sizes output/$@.bb 2> /dev/null ${bigPslToPsl} -collapseStrand output/$@.bb output/$@.psl cmp input/$@.psl output/$@.psl doubleStrand: mkout ${pslToBigPsl} input/$@.psl output/$@.tmp sort -k1,1 -k2,2n output/$@.tmp > output/$@.bigPslInput ${bedToBigBed} -type=bed12+12 -tab -as=${kentSrc}/hg/lib/bigPsl.as output/$@.bigPslInput input/chrom.sizes output/$@.bb 2> /dev/null ${bigPslToPsl} output/$@.bb output/$@.psl cmp input/$@.psl output/$@.psl badQSize: mkout - ${pslToBigPsl} -fa=input/MamRep605b.fa input/MamRep605b.psl output/$@.tmp && ${cmdShouldFail} + if ! ${pslToBigPsl} -fa=input/MamRep605b.fa input/MamRep605b.psl output/$@.tmp >& output/$@.err ; then true ; else ${cmdShouldFail} ; fi mkout: @mkdir -p output clean:: rm -rf output