015db67f25bdbaffebb795b6e952c405f15e1e23
markd
  Sun Mar 13 14:10:06 2022 -0700
premature commit of -repSizes, this really made things worse; back out

diff --git src/hg/utils/rmskAlignToPsl/tests/makefile src/hg/utils/rmskAlignToPsl/tests/makefile
index 8f75806..e988356 100644
--- src/hg/utils/rmskAlignToPsl/tests/makefile
+++ src/hg/utils/rmskAlignToPsl/tests/makefile
@@ -1,43 +1,37 @@
 kentSrc = ../../../..
 include ../../../../inc/common.mk
 
 rmskAlignToPsl = ${DESTBINDIR}/rmskAlignToPsl
 
 # input/hg38.fa.align.tsv is from Dfam_2.0
 
 pslCheck = pslCheck -verbose=0
 
 all::
 
-test:: hg38Test mm39Test mm39ProbTest hg38BigRmskTest wrongSizeTest
+test:: hg38Test mm39Test mm39ProbTest hg38BigRmskTest
 
 hg38Test: mkout
 	${rmskAlignToPsl} input/hg38.align.tsv output/$@.psl
 	diff expected/$@.psl output/$@.psl
 
 mm39Test: mkout
 	${rmskAlignToPsl} input/mm39.align.tsv output/$@.psl
 	diff expected/$@.psl output/$@.psl
 
 mm39ProbTest: mkout
 	${rmskAlignToPsl} input/mm39.prob.align.tsv output/$@.psl >output/$@.err 2>&1
 	diff expected/$@.psl output/$@.psl
 	diff expected/$@.err output/$@.err
 	${pslCheck} output/$@.psl
 
 hg38BigRmskTest: mkout
 	${rmskAlignToPsl} -bigRmsk input/hg38.dfam_3.3.bigRmskIn output/$@.psl
 	diff expected/$@.psl output/$@.psl
 	${pslCheck} output/$@.psl
 
-wrongSizeTest: mkout
-	${rmskAlignToPsl} -repSizes=input/wrongSize.sizes -bigRmsk input/wrongSize.bigRmskIn output/$@.psl 2> output/$@.out
-	diff expected/$@.psl output/$@.psl
-	diff expected/$@.out output/$@.out
-	${pslCheck} output/$@.psl
-
 mkout:
 	@mkdir -p output
 
 clean::
 	rm -rf output