56cfd7a79faa415392733aab06c016139e59a350 markd Sun Mar 13 09:47:25 2022 -0700 test cases was actually Dfam 3.3 diff --git src/hg/utils/rmskAlignToPsl/tests/makefile src/hg/utils/rmskAlignToPsl/tests/makefile index 8f9072e..e5a6c0a 100644 --- src/hg/utils/rmskAlignToPsl/tests/makefile +++ src/hg/utils/rmskAlignToPsl/tests/makefile @@ -1,34 +1,34 @@ kentSrc = ../../../.. include ../../../../inc/common.mk rmskAlignToPsl = ${DESTBINDIR}/rmskAlignToPsl # input/hg38.fa.align.tsv is from Dfam_2.0 all:: test:: hg38Test mm39Test mm39ProbTest hg38BigRmskTest hg38Test: mkout ${rmskAlignToPsl} input/hg38.align.tsv output/$@.psl diff expected/$@.psl output/$@.psl mm39Test: mkout ${rmskAlignToPsl} input/mm39.align.tsv output/$@.psl diff expected/$@.psl output/$@.psl mm39ProbTest: mkout ${rmskAlignToPsl} input/mm39.prob.align.tsv output/$@.psl >output/$@.err 2>&1 diff expected/$@.psl output/$@.psl diff expected/$@.err output/$@.err hg38BigRmskTest: mkout - ${rmskAlignToPsl} -bigRmsk input/hg38.dfam_3.5.bigRmskIn output/$@.psl + ${rmskAlignToPsl} -bigRmsk input/hg38.dfam_3.3.bigRmskIn output/$@.psl diff expected/$@.psl output/$@.psl mkout: @mkdir -p output clean:: rm -rf output