3d412101b5e9aaac062cb53e48c9fe859622fd05 angie Thu Jan 13 09:42:15 2022 -0800 AY.89 has been withdrawn - pango-designation v1.2.123 diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index a386176..879b3dc 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -182,31 +182,30 @@ AY.75.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C21622T > G29744N > C1329A > C22314T > T19127C AY.76 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A16775G > T7233C AY.77 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C10376T > T27346C AY.78 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C29200T > G14874T,G29227A AY.79 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > T2125C AY.8 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C18176T > C11455T > A14170G AY.80 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C19186T > G5017A,G19735T AY.81 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G25340T > G11358A,A28032G AY.82 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C10279T > C9144T,C22783T AY.83 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G15243T > C5544T,A25491T AY.84 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C27297T > G28086T AY.85 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C25810N > C26873N > G16914N,G26428N > C1825T,T17748A,C20320N,G19072N,A708N AY.86 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G15380T > G24095T,C29445T AY.87 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C12651T > C832T,G27556T AY.88 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C28724T > G20709T -AY.89 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21304A > G21305A > C21302T > C21846N > C7851T AY.9 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C22792T AY.9.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C22792T > G14030A > C18086T > G1729A AY.9.2.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C22792T > G14030A > C18086T > G1729A > A1189C > T6152C,C16092T AY.9.2.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C22792T > G14030A > C18086T > G1729A > C4321T > A9685G > C23585A AY.90 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G27990T > G9251A AY.91 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G29744N > C25413T > C28236T AY.91.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G29744N > C25413T > C28236T > T1871C > G25650T > C15540T,C17010T > C28310T AY.92 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C29167T > C28657T AY.93 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A1087G > C1101T > C7262T AY.94 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G6367T > C15924T AY.95 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C23277T > G24124A > T22293C AY.96 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461N > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > A28254C AY.98 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G526T AY.98.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G526T > C19524T > G2518T > C22314T > G5437T > G28086T > C7768T AY.99 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C15240T > T13216C > A3536G