52fa1b2103b94d28b62bc7a25f67bd4d228fa25a angie Wed Jan 12 09:54:40 2022 -0800 Added BA.1.1; renamed BB.1 to B.1.621.2 - pango-designation v1.2.122. Also mask AY.32's C21304T because 21302, 21304, 21305 are masked in Delta now (leave AY.89 unchanged so it doesn't conflict with AY.4; slated to be withdrawn.) diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index 54ddc2f..a386176 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -74,31 +74,31 @@ AY.25 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G26107C > A27507C AY.25.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G26107C > A27507C > A3948G > G11562T AY.25.1.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > G26107C > A27507C > A3948G > G11562T > G2564A > G23948T AY.26 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > G25352T > A27345T AY.26.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > G25352T > A27345T > G26529C > G20580T > G27703T > G23012C,A24587T,C29769N AY.27 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > T11938C > A14475G > G29422T AY.28 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C335T > C8950T,C9246T,G24794T AY.29 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > C5239T > T5514C AY.29.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > C5239T > T5514C > G22081T AY.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A11456G AY.3.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A11456G > G29050A > C29509T > C25339T > T23284C > C18115T > G3644T AY.3.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A11456G > G29050A > C29509T > C5784T > A10075G > C29750N > G5155A > C22338T AY.3.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > A11456G > G29050A > C29509T > C25339T > T23284C > A26021C > T2083C > G21770A > A6229G > C9924T > T12538C > A22803G AY.30 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C20320T > C24745T > G29427A > C6539T > G28690T > C9319T > A13482G AY.31 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C5184T > C1267T > C1191T > C9891T > T11418C > T12946C > A20262G > C27739T > C20320T > C24745T > G29427A > C6539T > C14262T > C29358T > G17331T > T3306C,T23480C,G24872T -AY.32 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C23277T > G24124A > C21304T > C9286T +AY.32 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C23277T > G24124A > C21304N > C9286T AY.33 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C22311T > A21647G AY.33.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C22311T > A21647G > C22458T > G23401T > G21010T > A18887G,G23522A > C4182T > T10190C,A11111G,C14318T,C17439T > C21707T AY.34 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053N > C8986T > A11332G > A11201G > C6402T > C21846N > G19563A,C26681T > G9441T > G18255T,G23593C AY.34.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G19563N,C26681T > G9441T > G18255T,G23593C > G26109A > C22498T,G27014T > C28961T AY.34.1.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G19563N,C26681T > G9441T > G18255T,G23593C > G26109A > C22498T,G27014T > C28961T > C25355T > G8017T AY.34.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053N > C8986T > A11332G > A11201G > C6402T > C21846N > G19563N,C26681T > G9441T > G18255T,G23593C > G26109A > C22498T,G27014T > A14457G > C21110T > C24138T > G11417T AY.35 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466N > T26767C > G15451N > C5184T > C1267T > C1191T > A17496G > T9678C > G9203A,C11005A > A20396G > A21792C > C6027A > C16915T > G23012C AY.36 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G24872T > A20532G > C29738N > G18079T > T15628C AY.37 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C2509T > G2185T > T20911C AY.38 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > T11418C > C9891T > C11514T > C5184T > A5584G > C13019T > C22227T > C2509T AY.39 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G27604A AY.39.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G27604A > G21372T > A13482G AY.39.1.1 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G27604A > G21372T > A13482G > G19563T AY.39.1.2 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G27604A > G21372T > A13482G > G1577A,C18555T AY.39.1.3 C14408T > C241N > C3037T > A23403G > G29742N > T22917G > T27638C > G28881T > G210N > C21618G > G29402T > C23604G > C25469T > C22995A,C27752T > A28461G > C16466T > T26767C > G15451A > C10029T > C19220T > G28916T > G4181T > C27874T > C7124T > G9053T > C8986T > A11332G > A11201G > C6402T > C21846N > G27604A > G21372T > A13482G > G2164T > C25046G @@ -247,35 +247,36 @@ P.1.14 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > C23380T > G9105A P.1.15 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > G11291N > A2596G > C18129T P.1.16 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > A25746G P.1.17 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C28603T > C346T P.1.17.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23525T > G23012A > A6613G,G25088T > A22812C,A23063T,T26149C > G21974T,A28877T,G28878C > C28512G > C13860T,G17259T > C12778T > A5648C > C3828T,G28167A > C24642T > T733C,C2749T > A6319G > G22132T > C21614T > C21621A > C21638T > T11296N > C28603T > C346T > T11288N,G11291N > A6704G > G19999T > C21707T P.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > C29754N > G23012A > C100N > G28975T > T10667G > C11824T > G28628T P.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > A22356N,C29724N > C23604A > T9867C > A4926G,C7564A,C11308A,T24187A,A27897C > T23341C > C12049T,C12053T,G23012A,A23063T > G24836A,C24863T > C17339T > C17074T P.4 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > G1811A > C3177T,C11450A,C12880T > A136N,C9693T,T9867C,C12008T,A15932G,G18756T,T20745C,G21987N,T22917G,A23720G,G25540A,C25708T,A28271C,C28932T P.5 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C24904T > G25906T > G5180A,G9929A,C21846T > G23012C,A23064C,C27807T,A28271T,C28311T P.6 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > G21305A > G2534T > C1077T,C3736T,C7043T,C10029T,A14113G,C24382T > G23587C,C25665T > C8980T,G23593T P.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G25088T > C12053T > C17676T > C17172T,C25844T,C28311T C.37 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A C.37.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > G10097A > C23731T > C4002T > C13536T > T7424G,T9867C,A28271T > C9857T > C10029T,C28311T > G21786T,C21789T > C7124T > T22917A,T23031C > C24138A > G28913T > C29311T > C26894T > T11296N > A28877T > G28878C > C20806T B.1.621 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T B.1.621.1 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T > C17707T > C5192T > A6704G,T22384A > C9120T > C20402T > T29748N > C28657T > G26167T -BB.1 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A23063T,C23604A > C10029T,C28887T > A28272T > G23012A > A26492T > A11451G,C17491T,C20148T > C21846T > C6037T > C4878T > A13057T,A21993C,T21995A > G22599A > T19035C > A3428G > C17707T > G29779N > C5192T > G29736N > G23311T,G26959A > T22907A +B.1.621.2 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093T > C27925A > A23063T,C23604A > C10029T,C28887T > A28272T > G23012A > A26492T > A11451G,C17491T,C20148T > C21846T > C6037T > C4878T > A13057T,A21993C,T21995A > G22599A > T19035C > A3428G > C17707T > G29779N > C5192T > G29736N > G23311T,G26959A > T22907A BB.2 C14408T > C241N > C3037T > A23403G > G25563T > C18877T > C28005T,C28093N > C27925A > A13057T,C23604A > A23063T > C6037T,G23012A > C10029T,A11451G,C20148T > C17491T,C21846T,C28887T > C4878T > A21993C,T21995A > T19035C,G22599A,A26492T > A3428G,A28272T > C17707T > C5192T > A6704G,T22384A > C9120T > C20402T > T29748N > C28657T > G26167T > C15963T > C24378T,C29409T B.1.160 C14408T > C241N > C3037T > A23403G > G25563T > C26735T > C18877T > G28975C > T26876C > G29399A > C25710T > G9526T,G22992A > G5629T > C11497T B.1.1.315 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C29466T > C22388T,C26060T,A29771N > T3256C,C19718T > A1163T,G19542T B.1.1.232 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C6573T > G12191T > T16479C > T2537G B.1.1.529 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > A18163G,C21762T,A24424T,T24469A,C25584T,G22898A > C10449A,C23854A,G23948T,C25000T,C26270T,C26577G,G26709A,A27259C,A28271T,C28311T > G8393N,A11537N,C15240N,T22673N,C23202N,A26530N > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,C27807T BA.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G +BA.1.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > G22599A BA.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C BA.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C26270T,C26577G,G26709A,A28271T,C28311T > C21762T,G22898A > T670G,G4184A,C4321T,C9534T,G10447A,C12880T,C15714T,G22775A,C26060T,C26858T,A29510C > C832T,C11235T B.1.637 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > G28975A > C25517T > A20262G > T9867C > C27925T > C9891T > A9749G > T22917G > A21801G,T22032C > C28887T > G11804A B.1.637.1 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > G28975A > C25517T > A20262N > T9867C > C27925T > C9891T > A9749G > T22917G > A21801G,T22032C > C28887T > G11804A > C25413T,C25703T > G28044T > C24138A > C5581T > T7249C,C16575T > T6345C > C556T,G25437C > G370T,T606C,C4449T,C10029T,A13535G,C22353T,G22898C,C22995G,C23604G,C25904T,T26767C,C28311T B.1.639 C14408T > C241N > C3037T > A23403G > G23012A > A28271G > T22020C,C22995A,C24138A,G24368T,T27919C,A28742G B.1.640 C14408T > C241N > C3037T > A23403G > G25563T > C28005N,C28093N > C27925N > A23063T,C23604A > C10029N,C28887T > G23012N > A26492N > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,T26767N,C27513T,C27807T,T29377C B.1.640.1 C14408T > C241N > C3037T > A23403G > G25563T > C28005T,C28093T > C27925A > A23063T,C23604A > C10029T,C28887T > A26492T > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,T26767C,C27513T,C27807T,T29377C > C601T,A1620G,G6622T,G7328T,C9711T,G9756A,T11418C,C16575T,C20283T,T22191C,T23030C,G24368C,G29405C B.1.640.2 C14408T > C241N > C3037T > A23403G > G25563T > A23063T,C23604A > C28887T > G23012A > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,C27513T,C27807T,T29377C > G9929A,T10561C,C11514T,C17004T,T17348C,A17916G,C18175T,C18804T,G19348T,T19680C,A21258G,G22205C,T23031C,G24977C,T26767G,T27833C,C27972T,T28002C,C28312T,G28337T,G29779N AA.1 C14408T > C241N > C3037T > A23403G > C6286T > C28932T > C22227T > G29645N > T445C > G21255C > C26801G > C5170T > G11132T > G22051T > C10078T > G11417T AV.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > G23012A > C9891T > C313T,T772C,G1820A,C2037T,C3743T,C5184T,A7479G,T11288A,G11291N,T11296N,T11503C,T14740G,C18395T,A21801G,T21992G,A21993T,C22687T,C22879G,A24950G,G24977C,T26159G,A26161T,G26709A,C26895N,C27297T,A28742G,C28744T A.23.1 T28144C > C8782T > G28878A > G29742N > G11230T > G28167A > G11266T,C22000T > C22033A,G23401T,T24097C > C4573T,C16575T,C23604G B.1.429 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > C28887T > A28272T > C29362T > T22917G > C26681T > G17014T > G22018T > G21600T XC C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > T22917G,C22995A > C7124T,G15451A,C16466T > C6402T > C21618G,C25469T > C23604G > C8986T,G9053T > C19220T,G28280C,A28281T,T28282A,C28977T > G4181T,C21846T,C27972T,G28048T,A28111G > G210N,C10029T,A11201G,A11332G,T26767C > C5239T,T5514C,G22081T,G27390T