src/hg/hgIntegrator/hgIntegrator.c a8fe8b8abb36f00fab1e4b11c1c008990df4965c

a8fe8b8abb36f00fab1e4b11c1c008990df4965c
braney
  Sat Mar 5 17:23:16 2022 -0800
add chromAliasSetup to hgIntegrator`

diff --git src/hg/hgIntegrator/hgIntegrator.c src/hg/hgIntegrator/hgIntegrator.c
index 80293f7..61d34e3 100644
--- src/hg/hgIntegrator/hgIntegrator.c
+++ src/hg/hgIntegrator/hgIntegrator.c
@@ -24,30 +24,31 @@
 #include "hCommon.h"
 #include "hdb.h"
 #include "hgColors.h"
 #include "hui.h"
 #include "joiner.h"
 #include "jsHelper.h"
 #include "jsonParse.h"
 #include "knetUdc.h"
 #include "textOut.h"
 #include "trackHub.h"
 #include "userRegions.h"
 #include "web.h"
 #include "annoFormatTab.h"
 #include "annoGratorQuery.h"
 #include "windowsToAscii.h"
+#include "chromAlias.h"
 
 /* Global Variables */
 struct cart *cart = NULL;             /* CGI and other variables */
 struct hash *oldVars = NULL;          /* Old contents of cart before it was updated by CGI */
 
 #define QUERY_SPEC "hgi_querySpec"
 #define UI_CHOICES "hgi_uiChoices"
 #define DO_QUERY "hgi_doQuery"
 
 #define hgiRegionType "hgi_range"
 #define hgiRegionTypePosition "position"
 #define hgiRegionTypeDefault hgiRegionTypePosition
 
 static void writeCartVar(struct cartJson *cj, char *varName)
 {
@@ -910,30 +911,31 @@
     if (userDefinedRegions)
         printf("# region=%s:%d-%d\n",
                region->chrom, region->chromStart+1, region->chromEnd);
     regionQuery(assembly, region, dataSources, fullTrackList, formatter);
     }
 
 textOutClose(&textOutPipe, &savedStdout);
 }
 
 
 void doMainPage()
 /* Send HTML with javascript to bootstrap the user interface. */
 {
 char *db = NULL, *genome = NULL, *clade = NULL;
 getDbGenomeClade(cart, &db, &genome, &clade, oldVars);
+chromAliasSetup(db);
 char *position = windowsToAscii(cartUsualString(cart, "position", hDefaultPos(db)));
 cartSetLastPosition(cart, position, oldVars);
 initGenbankTableNames(db);
 webStartWrapperDetailedNoArgs(cart, trackHubSkipHubName(db),
                               "", "Data Integrator",
                               TRUE, FALSE, TRUE, TRUE);
 
 // Ideally these would go in the <HEAD>
 puts("<link rel=\"stylesheet\" href=\"//code.jquery.com/ui/1.10.3/themes/smoothness/jquery-ui.css\">");
 puts("<link rel=\"stylesheet\" href=\"//netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css\">");
 
 puts("<div id=\"appContainer\">Loading...</div>");
 
 // Set a global JS variable hgsid.
 // Plain old "var ..." doesn't work (other scripts can't see it), it has to belong to window.