a381e294a9b7c94c78b8aa00ac36f2acb4d75704 dschmelt Fri Mar 4 14:21:44 2022 -0800 Making edits to variantMuts track and adding predResist track #29035 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 273d14c..75610ff 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,47 +39,64 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2006">2006 News</a></li> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2001">2001</a>-<a href="#2002">2002 News</a></li> </ul> </div> </div> </div> <!-- ============= 2022 archived news ============= --> <a name="2022"></a> + +<a name="030422"></a> +<h2>Mar. 4, 2022 New COVID track on Predicted Drug Resistance Variants</h2> +<p> +We have just added the <a href="/cgi-bin/hgTrackUi?db=wuhCor1&g=resistPred">Predicted Drug Resistance</a> +track to the SARS-CoV-2 (COVID-19) genome. This track shows 1931 amino acid variants +predicted to be relevant to anti-viral drug resistance. This data was created using +3D protein structures bound to an inhibitor drug, highlighting the adjacent amino acids. +Try it yourself:</p> +<ul> +<li><a href=" https://genome.ucsc.edu/s/view/DrugResistance"> +https://genome.ucsc.edu/s/view/DrugResistance</a></li> +</ul> +<p>We would like to thank the team at +<a target=_blank href="https://coronavirus3d.org/#/drug">Coronavirus3d.org</a> +for creating and sharing this research.</p> + <a name="022522a"></a> -<h2>Feb, 25, 2022 MANE select v1.0 track available for hg38</h2> +<h2>Feb. 25, 2022 MANE select v1.0 track available for hg38</h2> <p> We are happy to announce the release of the <a href="/cgi-bin/hgTrackUi?db=hg38&c=chrX&g=mane">MANE select v1.0</a> track for the human (<a href="/cgi-bin/hgGateway?db=hg38">GRCh38/hg38</a>) assembly. The <a href="https://www.ncbi.nlm.nih.gov/refseq/MANE/" target="_blank">Matched Annotation from NCBI and EMBL-EBI (MANE)</a> project aims to produce a matched set of high-confidence transcripts that are identically annotated between RefSeq (NCBI) and Ensembl/GENCODE (led by EMBL-EBI). Transcripts for MANE are chosen by a combination of automated and manual methods based on conservation, expression levels, clinical significance, and other factors.</p> <p> We would like to thank the NCBI and Ensembl-GENCODE collaboration for the MANE project. We would also like to thank Brian Raney and Jairo Navarro for the development and release of this track.</p> <a name="022522"></a> -<h2>Feb, 25, 2022 New COVID track on Drug Resistance Mutations</h2> +<h2>Feb. 25, 2022 New COVID track on Drug Resistance Mutations</h2> <p> We have just added the <a href="/cgi-bin/hgTrackUi?db=wuhCor1&g=resist">Drug Resistance</a> track to the SARS-CoV-2 (COVID-19) genome. This track shows 5 amino acid variants documented to confer drug treatment resistance to Remdesivir. Try it yourself:</p> <p> <a href=" https://genome.ucsc.edu/s/view/DrugResistance">https://genome.ucsc.edu/s/view/DrugResistance</a> </p> <p>We would like to thank data contributor Paul Gordon for making the data accessible on his <a href="https://people.ucalgary.ca/~gordonp/remdesivir_failure-RdRp.html"> University of Calgary website</a>.</p> <a name="022222"></a> <h2>Feb. 22, 2022 Recommended Track Sets paper</h2> <p>