5864de93205bac95ba8441e2ef8a8fbbfe893e15 max Wed Mar 2 05:27:13 2022 -0800 adding predicted resistance mutations track on wuhCor1, refs #29035 diff --git src/hg/makeDb/scripts/resistPred/resistPred.as src/hg/makeDb/scripts/resistPred/resistPred.as new file mode 100644 index 0000000..d777516 --- /dev/null +++ src/hg/makeDb/scripts/resistPred/resistPred.as @@ -0,0 +1,20 @@ +table resistPredj +"Browser extensible data (9 fields) plus other mutation annotations" + ( + string chrom; "Chromosome (or contig, scaffold, etc.)" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name of item" + uint score; "Score from 0-1000" + char[1] strand; "+ or -" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "Used as itemRgb as of 2004-11-22" + # Count Mutation Type Annotation Type Base change:Virus number AA change Residue number in PDB + string count; "Frequency in Mar 2022" + string mut; "Mutation Type" + string annot; "Annotations Type" + lstring changeFreq; "Base change and frequency for each" + lstring aa; "AA change" + lstring res; "Residue number in PDB structure" + )