fe18535e3c8f3cb73f5e1255ab80365ea3d2d65c angie Tue Mar 29 16:45:43 2022 -0700 Added BA.1.18 and BA.1.19 -- pango-designation v1.2.137 diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index 052a1d8..5eaef95 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -315,30 +315,32 @@ BA.1.6 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > C17639T BA.1.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > C27686T BA.1.8 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > G22427N > C29666T > C11455T > C23987T BA.1.9 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A > A26530N > C24503T > T5386G > G23048A > C23673T BA.1.10 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > A17042G BA.1.12 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > G22487C BA.1.13 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > G1957T BA.1.13.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > G1957T > A3779G > G19684T BA.1.14 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > C12786T BA.1.15 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > A29301G > T10135C > C25708T BA.1.15.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > A29301G > T10135C > C25708T > A24803G BA.1.16 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > C29632N > T3104C BA.1.16.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > C29632N > T3104C > T25556G > G25455A > G9758A BA.1.17 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > G5924A BA.1.17.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > G5924A > C4683T +BA.1.18 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > C5730T +BA.1.19 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T,C24130A > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A2832G,G8393A,A11537G,T13195C,C15240T,C21762T,T22673C,G22898A,C23202A,A26530G > C24503T > T5386G > G23048A > C21034T BA.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > C2790N > T670G,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198N,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C BA.2.1 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > C12789T BA.2.2 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > C4893T > T25224C > C12525T BA.2.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > C8991T BA.2.4 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > C2790N > T670G,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198N,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > T27374A BA.2.5 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > C2790N > T670G,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198N,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > C3317T BA.2.6 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > C2790N > T670G,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198N,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > C22792T > G25471C BA.2.7 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > C2790N > T670G,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198N,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > C22792T > C6636T BA.2.8 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > A26530N > C2790N > T670G,G4184A,C4321T,C9344T,A9424G,C9534T,C9866N,C10198N,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > T21048C > G25483A BA.3 C14408T > C241N > C3037T > A23403G > G28881A > G28883C > G28882A > C21846T > C23604A > A23063T > T22882G,C22995A,A23013C,C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A,A23040G,A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C26270T,C26577G,G26709A,A28271T,C28311T > C21762T,G22898A > T670G,G4184A,C4321T,C9534T,G10447A,C12880T,C15714T,G22775A,C26060T,C26858T,A29510C > C832T,C11235T B.1.637 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > G28975A > C25517T > A20262G > T9867C > C27925T > C9891T > A9749G > T22917G > A21801G,T22032C > C28887T > G11804A B.1.637.1 C14408T > C241N > C3037T > A23403G > G25563T > C1059T > G28975A > C25517T > A20262N > T9867C > C27925T > C9891T > A9749G > T22917G > A21801G,T22032C > C28887T > G11804A > C25413T,C25703T > G28044T > C24138A > C5581T > T7249C,C16575T > T6345C > C556T,G25437C > G370T,T606C,C4449T,C10029T,A13535G,C22353T,G22898C,C22995G,C23604G,C25904T,T26767C,C28311T B.1.639 C14408T > C241N > C3037T > A23403G > G23012A > A28271G > T22020C,C22995A,C24138A,G24368T,T27919C,A28742G B.1.640 C14408T > C241N > C3037T > A23403G > G25563T > C28005N,C28093N > C27925N > A23063T,C23604A > C10029N,C28887T > G23012N > A26492N > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,T26767N,C27513T,C27807T,T29377C B.1.640.1 C14408T > C241N > C3037T > A23403G > G25563T > C28005T,C28093T > C27925A > A23063T,C23604A > C10029T,C28887T > A26492T > C1191T,C2416T,C2455T,C11956T,C16869T,C21588T,G21848C,G22132T,A22600C,A22743G,T22907A,C24138A,C25487T,T26767C,C27513T,C27807T,T29377C > C601T,A1620G,G6622T,G7328T,C9711T,G9756A,T11418C,C16575T,C20283T,T22191C,T23030C,G24368C,G29405C