c9f040b7cd79e62f2082a62fb0ae6ccbc90b02c6
hiram
  Tue Mar 29 12:49:56 2022 -0700
adding chainNet definition to CHM13 T2T GCA_009914755.4 assembly hub refs #28907

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
index 3b96459..19aeb26 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
@@ -1,510 +1,605 @@
 ##############################################################################
+# GCA_009914755.4_CHM13_T2T_v2.0 - human - Homo sapiens - taxId: 9606 - primate
+##############################################################################
+track chainNetGCA_009914755.4
+compositeTrack on
+shortLabel CHM13 T2T Chain/Net
+longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 100.1
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90
+chainMinScore 5000
+chainLinearGap medium
+matrixHeader A, C, G, T
+otherDb GCA_009914755.4
+html chainNet
+
+    track chainNetGCA_009914755.4Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetGCA_009914755.4
+    spectrum on
+
+        track chainGCA_009914755.4
+        parent chainNetGCA_009914755.4Viewchain
+        subGroups view=chain
+        shortLabel CHM13 T2T Chain
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Chained Alignments
+        type bigChain GCA_009914755.4
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCA_009914755.4.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCA_009914755.4Link.bb
+
+        track chainSynGCA_009914755.4
+        parent chainNetGCA_009914755.4Viewchain
+        subGroups view=chain
+        shortLabel CHM13 T2T Chain
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Chained Alignments
+        type bigChain GCA_009914755.4
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCA_009914755.4.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCA_009914755.4Link.bb
+
+        track chainRBestGCA_009914755.4
+        parent chainNetGCA_009914755.4Viewchain
+        subGroups view=chain
+        shortLabel CHM13 T2T Chain
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Chained Alignments
+        type bigChain GCA_009914755.4
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCA_009914755.4.bb
+        linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCA_009914755.4Link.bb
+
+    track mafNetGCA_009914755.4Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetGCA_009914755.4
+
+        track netGCA_009914755.4
+        parent mafNetGCA_009914755.4Viewnet
+        subGroups view=net
+        shortLabel CHM13 T2T mafNet
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) mafNet Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.net.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.net.summary.bb
+        speciesOrder GCA_009914755.4
+        html chainNet
+
+        track synNetGCA_009914755.4
+        parent mafNetGCA_009914755.4Viewnet
+        subGroups view=net
+        shortLabel CHM13 T2T mafNet
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.synNet.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.synNet.summary.bb
+        speciesOrder GCA_009914755.4
+
+        track rbestNetGCA_009914755.4
+        parent mafNetGCA_009914755.4Viewnet
+        subGroups view=net
+        shortLabel CHM13 T2T mafNet
+        longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Net Alignment
+        type bigMaf
+        bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.rbestNet.bb
+        summary /gbdb/$D/bbi/chainNet/$D.GCA_009914755.4.rbestNet.summary.bb
+        speciesOrder GCA_009914755.4
+
+##############################################################################
 # GCA_901343595v1_MONAX5 - woodchuck - Marmota monax - mammal
 ##############################################################################
 track chainNetGCA_901343595v1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 200.3
 color 0,0,0
 altColor 255,255,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 matrixHeader A, C, G, T
 otherDb GCA_901343595v1
 chainMinScore 3000
 chainLinearGap medium
 spectrum on
 html chainNet
 
     track chainNetGCA_901343595v1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCA_901343595v1
     spectrum on
 
         track chainGCA_901343595v1_MONAX5
         parent chainNetGCA_901343595v1Viewchain
         subGroups view=chain
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain GCA_901343595v1
         html chainNet
 
     track chainNetGCA_901343595v1Viewnet
     shortLabel Net
     view net
     visibility dense
     parent chainNetGCA_901343595v1
 
         track netGCA_901343595v1_MONAX5
         parent chainNetGCA_901343595v1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign GCA_901343595v1 chainGCA_901343595v1_MONAX5
         html chainNet
 
 ##############################################################################
 # GCF_003668045.3 - Chinese hamster - Cricetulus griseus - taxId: 10029 - mammal
 ##############################################################################
 track chainNetGCF_003668045.3
 compositeTrack on
 shortLabel Chinese hamster Chain/Net
 longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainLinearGap medium
 chainMinScore 3000
 matrixHeader A, C, G, T
 otherDb GCF_003668045.3
 html chainNet
 
     track chainNetGCF_003668045.3Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCF_003668045.3
     spectrum on
 
         track chainGCF_003668045.3
         parent chainNetGCF_003668045.3Viewchain
         subGroups view=chain
         shortLabel Chinese hamster Chain
         longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0) Chained Alignments
         type bigChain GCF_003668045.3
         bigDataUrl /gbdb/$D/bbi/chainNet/chainGCF_003668045.3.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/chainGCF_003668045.3Link.bb
         html chainNet
 
     track mafNetGCF_003668045.3Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_003668045.3
 
         track netGCF_003668045.3
         parent mafNetGCF_003668045.3Viewnet
         subGroups view=net
         shortLabel Chinese hamster mafNet
         longLabel Chinese hamster (Jun. 2020 GCF_003668045.3_CriGri-PICRH-1.0) mafNet Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_003668045.3.net.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_003668045.3.net.summary.bb
         speciesOrder GCF_003668045.3
         html chainNet
 
 ##############################################################################
 # GCF_009829145.1 - lance-tailed manakin - Chiroxiphia lanceolata - taxId: 296741 - birds
 ##############################################################################
 track chainNetGCF_009829145.1
 compositeTrack on
 shortLabel lance-tailed manakin Chain/Net
 longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainMinScore 3000
 chainLinearGap medium
 matrixHeader A, C, G, T
 otherDb GCF_009829145.1
 html chainNet
 
     track chainNetGCF_009829145.1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCF_009829145.1
     spectrum on
 
         track chainGCF_009829145.1
         parent chainNetGCF_009829145.1Viewchain
         subGroups view=chain
         shortLabel lance-tailed manakin Chain
         longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri) Chained Alignments
         type bigChain GCF_009829145.1
         bigDataUrl /gbdb/$D/bbi/chainNet/chainGCF_009829145.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/chainGCF_009829145.1Link.bb
         html chainNet
 
     track mafNetGCF_009829145.1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_009829145.1
 
         track netGCF_009829145.1
         parent mafNetGCF_009829145.1Viewnet
         subGroups view=net
         shortLabel lance-tailed manakin mafNet
         longLabel lance-tailed manakin (Jan. 2020 GCF_009829145.1_bChiLan1.pri) mafNet Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_009829145.1.net.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_009829145.1.net.summary.bb
         speciesOrder GCF_009829145.1
         html chainNet
 
 ##############################################################################
 # GCF_002742125.1 - Rambouillet sheep - Ovis aries - taxId: 9940 - mammal
 ##############################################################################
 track chainNetGCF_002742125.1
 compositeTrack on
 shortLabel Rambouillet sheep Chain/Net
 longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainMinScore 3000
 chainLinearGap medium
 matrixHeader A, C, G, T
 otherDb GCF_002742125.1
 html chainNet
 
     track chainNetGCF_002742125.1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCF_002742125.1
     spectrum on
 
         track chainGCF_002742125.1
         parent chainNetGCF_002742125.1Viewchain
         subGroups view=chain
         shortLabel Rambouillet sheep Chain
         longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Chained Alignments
         type bigChain GCF_002742125.1
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_002742125.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_002742125.1Link.bb
 
         track chainSynGCF_002742125.1
         parent chainNetGCF_002742125.1Viewchain
         subGroups view=chain
         shortLabel Rambouillet sheep Chain
         longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Syntenic Chained Alignments
         type bigChain GCF_002742125.1
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_002742125.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_002742125.1Link.bb
 
         track chainRBestGCF_002742125.1
         parent chainNetGCF_002742125.1Viewchain
         subGroups view=chain
         shortLabel Rambouillet sheep Chain
         longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Reciprocal Best Chained Alignments
         type bigChain GCF_002742125.1
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_002742125.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_002742125.1Link.bb
 
     track mafNetGCF_002742125.1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_002742125.1
 
         track netGCF_002742125.1
         parent mafNetGCF_002742125.1Viewnet
         subGroups view=net
         shortLabel Rambouillet sheep mafNet
         longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) mafNet Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.summary.bb
         speciesOrder GCF_002742125.1
         html chainNet
 
         track synNetGCF_002742125.1
         parent mafNetGCF_002742125.1Viewnet
         subGroups view=net
         shortLabel Rambouillet sheep mafNet
         longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Syntenic Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.synNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.synNet.summary.bb
         speciesOrder GCF_002742125.1
 
         track rbestNetGCF_002742125.1
         parent mafNetGCF_002742125.1Viewnet
         subGroups view=net
         shortLabel Rambouillet sheep mafNet
         longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) Reciprocal Best Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.rbestNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.rbestNet.summary.bb
         speciesOrder GCF_002742125.1
 
 ##############################################################################
 # GCA_018400075.1 - Zebrafish T5D - Danio rerio - taxId: 7955 - fish
 ##############################################################################
 track chainNetGCA_018400075.1
 compositeTrack on
 shortLabel Zebrafish T5D Chain/Net
 longLabel Zebrafish T5D (May 2021 GCA_018400075.1_ASM1840007v1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainMinScore 5000
 chainLinearGap loose
 matrixHeader A, C, G, T
 otherDb GCA_018400075.1
 html chainNet
 
     track chainNetGCA_018400075.1Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCA_018400075.1
     spectrum on
 
         track chainGCA_018400075.1
         parent chainNetGCA_018400075.1Viewchain
         subGroups view=chain
         shortLabel Zebrafish T5D Chain
         longLabel Zebrafish T5D (May 2021 GCA_018400075.1_ASM1840007v1) Chained Alignments
         type bigChain GCA_018400075.1
         bigDataUrl /gbdb/$D/bbi/chainNet/chainGCA_018400075.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/chainGCA_018400075.1Link.bb
         html chainNet
 
     track mafNetGCA_018400075.1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCA_018400075.1
 
         track netGCA_018400075.1
         parent mafNetGCA_018400075.1Viewnet
         subGroups view=net
         shortLabel Zebrafish T5D mafNet
         longLabel Zebrafish T5D (May 2021 GCA_018400075.1_ASM1840007v1) mafNet Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_018400075.1.net.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCA_018400075.1.net.summary.bb
         speciesOrder GCA_018400075.1
         html chainNet
 
 ##############################################################################
 # GCF_016699485.2 - chicken (matMap) - Gallus gallus - taxId: 9031 - birds
 ##############################################################################
 track chainNetGCF_016699485.2
 compositeTrack on
 shortLabel Chicken Chain/Net
 longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainMinScore 5000
 chainLinearGap loose
 matrixHeader A, C, G, T
 otherDb GCF_016699485.2
 html chainNet
 
     track chainNetGCF_016699485.2Viewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCF_016699485.2
     spectrum on
 
         track chainGCF_016699485.2
         parent chainNetGCF_016699485.2Viewchain
         subGroups view=chain
         shortLabel Chicken Chain
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Chained Alignments
         type bigChain GCF_016699485.2
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_016699485.2.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_016699485.2Link.bb
 
         track chainSynGCF_016699485.2
         parent chainNetGCF_016699485.2Viewchain
         subGroups view=chain
         shortLabel Chicken synChain
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Syntenic Chained Alignments
         type bigChain GCF_016699485.2
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_016699485.2.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_016699485.2Link.bb
 
         track chainRBestGCF_016699485.2
         parent chainNetGCF_016699485.2Viewchain
         subGroups view=chain
         shortLabel Chicken rbChain
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Reciprocal Best Chained Alignments
         type bigChain GCF_016699485.2
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_016699485.2.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_016699485.2Link.bb
 
     track mafNetGCF_016699485.2Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_016699485.2
 
         track netGCF_016699485.2
         parent mafNetGCF_016699485.2Viewnet
         subGroups view=net
         shortLabel Chicken net
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.net.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.net.summary.bb
         speciesOrder GCF_016699485.2
 
         track synNetGCF_016699485.2
         parent mafNetGCF_016699485.2Viewnet
         subGroups view=net
         shortLabel Chicken synNet
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Syntenic Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.synNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.synNet.summary.bb
         speciesOrder GCF_016699485.2
 
         track rbestNetGCF_016699485.2
         parent mafNetGCF_016699485.2Viewnet
         subGroups view=net
         shortLabel Chicken rbestNet
         longLabel Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)) Reciprocal Best Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.rbestNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_016699485.2.rbestNet.summary.bb
         speciesOrder GCF_016699485.2
 
 ##############################################################################
 # GCF_000349665.1 - golden hamster - Gallus gallus - taxId: 9031 - birds
 ##############################################################################
 track chainNetGCF_000349665.1
 compositeTrack on
 shortLabel Golden hamster Chain/Net
 longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 100.1
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 chainMinScore 5000
 chainLinearGap loose
 matrixHeader A, C, G, T
 otherDb GCF_000349665.1
 html chainNet
 
     track chainNetGCF_000349665.1iewchain
     shortLabel Chain
     view chain
     visibility pack
     parent chainNetGCF_000349665.1
     spectrum on
 
         track chainGCF_000349665.1
         parent chainNetGCF_000349665.1iewchain
         subGroups view=chain
         shortLabel Golden hamster Chain
         longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Chained Alignments
         type bigChain GCF_000349665.1
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_000349665.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_000349665.1Link.bb
 
         track chainSynGCF_000349665.1
         parent chainNetGCF_000349665.1iewchain
         subGroups view=chain
         shortLabel Golden hamster synChain
         longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Syntenic Chained Alignments
         type bigChain GCF_000349665.1
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_000349665.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainSynGCF_000349665.1Link.bb
 
         track chainRBestGCF_000349665.1
         parent chainNetGCF_000349665.1iewchain
         subGroups view=chain
         shortLabel Golden hamster rbChain
         longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Reciprocal Best Chained Alignments
         type bigChain GCF_000349665.1
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_000349665.1.bb
         linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainRBestGCF_000349665.1Link.bb
 
     track mafNetGCF_000349665.1iewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetGCF_000349665.1
 
         track netGCF_000349665.1
         parent mafNetGCF_000349665.1iewnet
         subGroups view=net
         shortLabel Golden hamster net
         longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.net.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.net.summary.bb
         speciesOrder GCF_000349665.1
 
         track synNetGCF_000349665.1
         parent mafNetGCF_000349665.1iewnet
         subGroups view=net
         shortLabel Golden hamster synNet
         longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Syntenic Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.synNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.synNet.summary.bb
         speciesOrder GCF_000349665.1
 
         track rbestNetGCF_000349665.1
         parent mafNetGCF_000349665.1iewnet
         subGroups view=net
         shortLabel Golden hamster rbestNet
         longLabel Golden hamster (Mar. 2013 (MesAur1.0/GCF_000349665.1) Reciprocal Best Net Alignment
         type bigMaf
         bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.rbestNet.bb
         summary /gbdb/$D/bbi/chainNet/$D.GCF_000349665.1.rbestNet.summary.bb
         speciesOrder GCF_000349665.1