55e0b15e79ab362926642bbab4d7648ec307eae7
brianlee
  Tue Mar 15 08:10:06 2022 -0700
Fixing reported 404 in static doc pages, updating links to stable PMC articles on protein database, no RM

diff --git src/hg/htdocs/goldenPath/help/hgGeneGraph.html src/hg/htdocs/goldenPath/help/hgGeneGraph.html
index a8d1b49..0596632 100755
--- src/hg/htdocs/goldenPath/help/hgGeneGraph.html
+++ src/hg/htdocs/goldenPath/help/hgGeneGraph.html
@@ -202,36 +202,36 @@
  <ul>
    <li>Protein interactions</li>
    <ul>
      <li><a href="http://irefindex.org/" target="_blank">iRefIndex 13</a> which includes
          <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC165503/" target="_blank">BIND</a>,
          <a href="https://thebiogrid.org/" target="_blank">BioGRID</a>,
          <a href="http://mips.helmholtz-muenchen.de/corum/" target="_blank">CORUM</a>,
          <a href="http://dip.doe-mbi.ucla.edu/" target="_blank">DIP</a>,
          <a href="http://www.hprd.org/" target="_blank">HPRD</a>,
          <a href="http://www.innatedb.com/" target="_blank">InnateDB</a>,
          <a href="http://www.ebi.ac.uk/intact/" target="_blank">IntAct</a>,
          <a href="http://matrixdb.univ-lyon1.fr/" target="_blank">MatrixDB</a>,
          <a href="http://mint.bio.uniroma2.it/" target="_blank">MINT</a>,
          <a href="https://www.ncbi.nlm.nih.gov/pubmed/16381906" target="_blank">MPact</a>,
          <a href="https://www.ncbi.nlm.nih.gov/pubmed/18556668" target="_blank">MPIDB</a> and
-         <a href="http://mips.helmholtz-muenchen.de/proj/ppi/" target="_blank">MPPI</a></li>
+         <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8218707/" target="_blank">MPPI</a></li>
      <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/19762544" target="_blank">Androgen Responsive
          Gene Database</a>. This database is not available anymore on the internet, but we kept
          <a href="http://hgdownload.soe.ucsc.edu/goldenPath/external/geneGraph/">a copy</a>.</li>
      <li><a href="http://string-db.org/" target="_blank">String 9.1</a></li>
-     <li><a href="http://mips.helmholtz-muenchen.de/proj/ppi/negatome/"
+     <li><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965096/"
           target="_blank">Negatome 2.0</a></li>
      <li><a href="http://mips.helmholtz-muenchen.de/corum/"
           target="_blank">Corum Protein Complexes</a></li>
      <li><a href="http://www.geneontology.org"
           target="_blank">Gene Ontology Protein Complexes</a></li>
    </ul>
    <li>Pathways</li>
    <ul>
      <li><a href="http://www.genome.jp/kegg/pathway.html" target="_blank">KEGG</a>, Version from
            April 2011. This is a version of the database before the switch to a
            <a href="http://www.kegg.jp/kegg/legal.html">non-commercial license</a>.</li>
      <li><a href="https://pid.nci.nih.gov/" target="_blank">NCI Pathway Interaction Database</a>.
          This database is not available anymore on the internet in its original format,
          but we kept <a href="http://hgdownload.soe.ucsc.edu/goldenPath/external/geneGraph/">a
          copy</a>.</li>