8654ed78664068f06114719493d5e3fff2550d33 chmalee Tue Mar 15 12:31:00 2022 -0700 Fixups to get the genbank related code to compile after common.mk and hg/lib -> cgilib changes diff --git src/hg/makeDb/genbank/common.mk src/hg/makeDb/genbank/common.mk index b99c5c2..0383d84 100644 --- src/hg/makeDb/genbank/common.mk +++ src/hg/makeDb/genbank/common.mk @@ -35,31 +35,31 @@ INCL = -I${GBROOT}/src/inc -I${KENT}/inc -I${KENT}/hg/inc CFLAGS = ${COPT} ${STATIC} -DJK_WARN -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE ${HG_WARN} ${INCL} # for debugging hash usage #CFLAGS += -DDUMP_HASH_STATS GB_BINDIR = ${GBROOT}/bin GB_BINARCH = ${GB_BINDIR}/${MACHTYPE} GB_LIBDIR = ${GBROOT}/lib GB_LIBARCH = ${GB_LIBDIR}/${MACHTYPE} LIBGENBANK = $(GB_LIBARCH)/libgenbank.a MYLIBDIR = ${KENT}/lib/$(MACHTYPE) -JKLIBS = $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a +JKLIBS = $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a $(MYLIBDIR)/jkhgapcgi.a LIBS = $(LIBGENBANK) ${JKLIBS} ${MYSQLLIBS} -lm ${L} TESTBIN = ${GBROOT}/tests/bin TESTBINARCH = ${TESTBIN}/$(MACHTYPE) MKDIR = mkdir -p STRINGIFY = stringify %.o: %.c ${CC} ${CFLAGS} -c -o $@ $< $(GB_BINARCH)/%: ${O} makefile ${LIBGENBANK} @${MKDIR} -p ${GB_BINARCH} ${CC} ${CFLAGS} -o $@ $O $(LIBS)