e9934975b34d714a60fefb524c24d8d42a617863
Merge parents e3d6014 0bb5fe7
dschmelt
  Wed Mar 16 11:35:35 2022 -0700
Resolving merge refs #29100

diff --cc src/hg/makeDb/trackDb/human/panelApp.html
index 8a2f1f4,66fc8ad..46affa4
--- src/hg/makeDb/trackDb/human/panelApp.html
+++ src/hg/makeDb/trackDb/human/panelApp.html
@@@ -29,63 -30,63 +30,63 @@@
  <p>
  The individual tracks are colored by <b>confidence level:</b>
  
  <ul>
  <li><b><font color="#32CD32">Score 3 (lime green)</font></b> - <b>High level of evidence</b> 
  for this gene-disease association. Demonstrates confidence that this gene should be 
  used for genome interpretation.</li>
  <li><b><font color="#FFBF00">Score 2 (amber)</font></b> - <b>Moderate evidence</b> 
  for this gene-disease association. This gene should not be used for genomic 
  interpretation.</li>
  <li><b><font color="red">Score 0 or 1 (red)</font></b> - <b>Not enough evidence</b> 
  for this gene-disease association. This gene should not be used for 
  genomic interpretation. </li>
  </ul>
  <p>
 -Mouseover on items shows the gene name, confidence level, mode of inheritance
 -(if known) and phenotypes related to the gene. supporting evidence of
 -dosage sensitivity. Tracks can be filtered according to the confidence
 +Mouseover on items shows the gene name, panel associated, mode of inheritance 
 +(if known), phenotypes related to the gene, and confidence level. Tracks can 
 +be filtered according to the confidence 
  level of disease association evidence. For more information on 
 -the use of this data see the
 -<a target="_blank" href="https://panelapp.genomicsengland.co.uk/#!FAQs">PanelApp FAQs</a>.
 +the use of this data, see the PanelApp
 +<a target="_blank" href="https://panelapp.genomicsengland.co.uk/#!FAQs">FAQs</a>.
  </p>
  
  <h2>Data Access</h2>
  <p>
  The raw data can be explored interactively with the
- <a target="_blank" href="https://genome.ucsc.edu/cgi-bin/hgTables">Table Browser</a> or the 
- <a target="_blank" href="https://genome.ucsc.edu/cgi-bin/hgIntegrator">Data Integrator</a>.
+ <a target="_blank" href="/cgi-bin/hgTables">Table Browser</a> or the
+ <a target="_blank" href="/cgi-bin/hgIntegrator">Data Integrator</a>.
  For automated analysis, the data may be queried from our
- <a target="_blank" href="https://genome.ucsc.edu/goldenPath/help/api.html">REST API</a>. 
+ <a target="_blank" href="/goldenPath/help/api.html">REST API</a>.
  Please refer to our
  <a target="_blank" href="https://groups.google.com/a/soe.ucsc.edu/forum/#!forum/genome">
  mailing list archives</a> for questions, or our
- <a target="_blank" href="https://genome.ucsc.edu/FAQ/FAQdownloads.html#downloads36">
+ <a target="_blank" href="/FAQ/FAQdownloads.html#downloads36">
  Data Access FAQ</a> for more information.
  </p>
  <p>
  Data is also freely available on the
  <a target="_blank" href="https://panelapp.genomicsengland.co.uk/#!API">PanelApp API</a>.
  </p>
  
  <h2>Methods</h2>
  <p>
  PanelApp files were reformatted at UCSC to the <a target="_blank"
- href="https://genome.ucsc.edu/goldenPath/help/bigBed.html">bigBed</a> format. 
+ href="/goldenPath/help/bigBed.html">bigBed</a> format.
  </p>
  
  <h2>Credits</h2>
  <p>
  Thank you to Genomics England PanelApp, especially Catherine Snow for technical
- coordination and consultation, and to Beagan Nguy, Christopher Lee, Daniel Schmelter
- and Anna Benet-Pages of the Genome Browser team.
+ coordination and consultation. Thank you to Beagan Nguy, Christopher Lee, Daniel Schmelter,
+ and Ana Benet-Pag&egrave;s of the Genome Browser team for the creation of the tracks.
  </p>
  
  <h2>Reference</h2>
  <p>
      Martin AR, Williams E, Foulger RE, Leigh S, Daugherty LC, Niblock O, Leong IUS, Smith KR,
      Gerasimenko O, Haraldsdottir E <em>et al</em>.
      <a href="https://www.ncbi.nlm.nih.gov/pubmed/31676867" target="_blank">
      PanelApp crowdsources expert knowledge to establish consensus diagnostic gene panels</a>.
      <em>Nat Genet</em>. 2019 Nov;51(11):1560-1565.
      PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31676867" target="_blank">31676867</a>
  </p>