5ff5dda17f2044b59aebf9d7009b7e1fadbc171a hiram Thu Mar 17 23:04:42 2022 -0700 correctly write out the groups file refs #28961 diff --git src/hg/makeDb/doc/asmHubs/mkGenomes.pl src/hg/makeDb/doc/asmHubs/mkGenomes.pl index b497bb0..3e04174 100755 --- src/hg/makeDb/doc/asmHubs/mkGenomes.pl +++ src/hg/makeDb/doc/asmHubs/mkGenomes.pl @@ -232,31 +232,31 @@ printf GF "defaultPos %s\n", $defPos; printf GF "scientificName %s\n", $descr; printf GF "htmlPath html/%s.description.html\n", $asmId; # until blat server host is ready for hgdownload, avoid these lines if ($blatHost ne $downloadHost) { if ( -s "${destDir}/$accessionId.trans.gfidx" ) { printf GF "blat $blatHost$blatHostDomain $blatPort dynamic $accessionDir/$accessionId\n"; printf GF "transBlat $blatHost$blatHostDomain $blatPort dynamic $accessionDir/$accessionId\n"; printf GF "isPcr $blatHost$blatHostDomain $blatPort dynamic $accessionDir/$accessionId\n"; } } close (GF); my $localGroups = "$buildDir/${asmId}.groups.txt"; open (GR, ">$localGroups") or die "can not write to $localGroups"; - print GR "%s", $groupsTxt; + printf GR "%s", $groupsTxt; close (GR); } __END__ description Mastacembelus armatus twoBitPath GCA_900324485.2_fMasArm1.2/trackData/addMask/GCA_900324485.2_fMasArm1.2.masked.2bit organism Zig-Zag eel defaultPos LR535842.1:14552035-14572034 orderKey 1 scientificName Mastacembelus armatus htmlPath GCA_900324485.2_fMasArm1.2/html/GCA_900324485.2_fMasArm1.2.description.html # head -25 GCA_002180035.3_HG00514_prelim_3.0_assembly_report.txt