Commits for markd

v428_base to v429_preview (2022-03-14 to 2022-03-21) v429

523f18621dab1d7994334cb25037f67b406c947a Fri Feb 25 13:11:48 2022 -0800

• addition CHM13 V2.0 assembly T2T supplyed tracks
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/build.txt - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/doc/chm13v2.0_CytoBandMapping.readme.txt - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/doc/chm13v2.0_CytoBandMapping.tsv - lines changed 863, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/proseq.html - lines changed 67, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/sedefSegDups.html - lines changed 40, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/makefile - lines changed 40, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/schema/sedefSegDups.as - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/cytoBandMapped.trackDb.txt - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/proseq.trackDb.txt - lines changed 81, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/sedefSegDups.trackDb.txt - lines changed 11, context: html, text, full: html, text

b0856ca59f90cd3965886704dd604e821b8bd1db Wed Mar 2 14:35:24 2022 -0800

• add rDNA models
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/build.txt - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/rdnaModel.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/drnaModel.trackDb.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv - lines changed 1, context: html, text, full: html, text

a9b73dddfd3592bf439efab408380eedb3938e5a Wed Mar 2 21:29:48 2022 -0800

• added RNA-Seq and rDNA arrays
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/build.txt - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/proseq.html - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/rnaseq.html - lines changed 66, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/makefile - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/drnaModel.trackDb.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/proseq.trackDb.txt - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/rdnaModel.trackDb.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/rnaseq.trackDb.txt - lines changed 48, context: html, text, full: html, text

6ffdb62e185cb4cdd3aaa078a84fc974652e7d1a Sun Mar 6 15:10:09 2022 -0800

• fixed formating of CHM13
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/build.txt - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/rnaseq.html - lines changed 5, context: html, text, full: html, text

0deb2b5b7d3651d35812b5f70d883168c6fad514 Mon Mar 14 10:23:49 2022 -0700

• added files for CAT/Liftoff genes. Ensure tracks are not concatenated
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/build.txt - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/catLiftOffGenes.html - lines changed 104, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/html/sedefSegDups.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/catLiftOffGenes.trackDb.txt - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/cytoBandMapped.trackDb.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/proseq.trackDb.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/GCA_009914755.4_CHM13_T2T_v2.0/trackDb/rnaseq.trackDb.txt - lines changed 2, context: html, text, full: html, text

df3bc0c8f772990ab517f90c4d03ef8ea89dcf68 Mon Mar 14 10:24:35 2022 -0700

• Merge branch 'chm13-v2.0-build'