06c419b9e75122f425657acb9e4fbde86cce7786 hiram Sat Mar 26 07:56:58 2022 -0700 wait until v429 code gets out to turn on use of chromAlias.bb refs #27228 diff --git src/hg/makeDb/doc/asmHubs/mkGenomes.pl src/hg/makeDb/doc/asmHubs/mkGenomes.pl index 95756fa..f54362f 100755 --- src/hg/makeDb/doc/asmHubs/mkGenomes.pl +++ src/hg/makeDb/doc/asmHubs/mkGenomes.pl @@ -166,31 +166,33 @@ my $orgName=`grep -i "organism name:" $asmReport | head -1 | sed -e 's#.* name: .* (##; s#).*##;'`; chomp $orgName; if (defined($commonName{$asmId})) { $orgName = $commonName{$asmId}; } printf "genome %s\n", $accessionId; printf "taxId %s\n", $taxId if (length($taxId) > 1); printf "trackDb ../%s/%s/trackDb.txt\n", $accessionDir, $accessionId; printf "groups groups.txt\n"; printf "description %s\n", $orgName; printf "twoBitPath ../%s/%s/%s.2bit\n", $accessionDir, $accessionId, $accessionId; printf "twoBitBptUrl ../%s/%s/%s.2bit.bpt\n", $accessionDir, $accessionId, $accessionId; printf "chromSizes ../%s/%s/%s.chrom.sizes.txt\n", $accessionDir, $accessionId, $accessionId; - if ( -s "${buildDir}/${asmId}.chromAlias.bb" ) { + # wait until code gets out for v429 release before using chromAlias.bb + # for the chromInfoPage display of hgTracks + if ( (0 == 1) && -s "${buildDir}/${asmId}.chromAlias.bb" ) { printf "chromAliasBb ../%s/%s/%s.chromAlias.bb\n", $accessionDir, $accessionId, $accessionId; } else { printf "chromAlias ../%s/%s/%s.chromAlias.txt\n", $accessionDir, $accessionId, $accessionId; } printf "organism %s\n", $descr; my $chrName=`head -1 $buildDir/$asmId.chrom.sizes | awk '{print \$1}'`; chomp $chrName; my $bigChrom=`head -1 $buildDir/$asmId.chrom.sizes | awk '{print \$NF}'`; chomp $bigChrom; my $oneThird = int($bigChrom/3); my $tenK = $oneThird + 10000; $tenK = $bigChrom if ($tenK > $bigChrom); my $defPos="${chrName}:${oneThird}-${tenK}"; if ( -s "$asmId/defaultPos.txt" ) { $defPos=`cat "$asmId/defaultPos.txt"`;