7f6ed181ccec7c0a8e4e8e422a15652592db62f6 hiram Wed Mar 23 15:11:32 2022 -0700 most recent set of corrections refs #28961 diff --git src/hg/gar/rebuild.sh src/hg/gar/rebuild.sh index 435b599..4b8578c 100755 --- src/hg/gar/rebuild.sh +++ src/hg/gar/rebuild.sh @@ -1,34 +1,35 @@ #!/bin/bash set -beEu -o pipefail if [ $# -ne 1 ]; then printf "usage: rebuild.sh makeItSo\n" 1>&2 exit 255 fi if [ "$1" != "makeItSo" ]; then printf "usage: rebuild.sh makeItSo\n" 1>&2 exit 255 fi export srcDir="$HOME/kent/src/hg/gar" export dateStamp=`date "+%F"` export workDir="/hive/data/outside/ncbi/genomes/gar/$dateStamp" if [ ! -d "${workDir}" ]; then mkdir "${workDir}" fi printf "$workDir\n" cd "${workDir}" printf "### running time ucscEquiv.sh ###\n" time $srcDir/ucscEquiv.sh printf "### running time garTable.sh ###\n" time $srcDir/garTable.sh > next.html 2> ${dateStamp}.log rm -f index.html mv next.html index.html chmod +x index.html printf "### finished ###\n" +printf "# %s/index.html\n" "${workDir}"