84b75d01f40d943cd0ce7ea69b0f85d7bf61ccfd dschmelt Fri Apr 22 15:16:09 2022 -0700 Announcing EVA tracks and minor change to settings refs #29031 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 7b29f57..6ee3be2 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -106,30 +106,57 @@ <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=placentaVentoTormo&position=default">Placenta Vento-Tormo</a> </li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=rectumWang&position=default">Rectum Wang</a> </li> <li> <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=skinSoleBoldo&position=default">Skin Sole-Boldo</a> </li> </ul> We hope that this combined format will facilitate research and comparison with the recently released <a href="#033122">Tabula Sapiens</a> expression tracks. </p> END PREPPED FOR RELEASE --> +<a name="042222"></a> +<h2>Apr. 22, 2022 European Variant Archive (EVA) data now available on 16 assemblies</h2> +<p> +The <a href="https://www.ebi.ac.uk/eva/" target="_blank">European Variant Achive</a> +has extensive data on variation across many different species and assemblies. We have +updated our 16 most popular non-human genome assemblies with their latest data: +<a href="https://www.ebi.ac.uk/eva/?RS-Release&releaseVersion=3" target="_blank">Release 3</a>. +Adding more to this dataset, we processed the raw data to include two extra fields, describing +variant class and amino acid change if present. You can read more about these datasets on +the <a href="/cgi-bin/hgTrackUi?db=mm39&g=evaSnp">description page</a> +of any of the listed organisms. UCSC is proud to support research into ever-increasing species +diversity and variant display. Happy Earth Day!</p> +<ul> +<li>Mouse (<a href="/cgi-bin/hgTracks?db=mm39">mm39</a>, <a href="/cgi-bin/hgTracks?db=mm10">mm10</a>) +<li>Zebrafish (<a href="/cgi-bin/hgTracks?db=danRer11">danRer11</a>, <a href="/cgi-bin/hgTracks?db=danRer10">danRer10</a>) +<li>Cow (<a href="/cgi-bin/hgTracks?db=bosTau9">bosTau9</a>) +<li>Fruit Fly (<a href="/cgi-bin/hgTracks?db=dm6">dm6</a>) +<li>Chicken (<a href="/cgi-bin/hgTracks?db=galGal6">galGal6</a>, <a href="/cgi-bin/hgTracks?db=galGal5">galGal5</a>) +<li>Pig (<a href="/cgi-bin/hgTracks?db=susScr11">susScr11</a>) +<li>Rat (<a href="/cgi-bin/hgTracks?db=rn7">rn7</a>, <a href="/cgi-bin/hgTracks?db=rn6">rn6</a>) +<li>Horse (<a href="/cgi-bin/hgTracks?db=equCab3">equCab3</a>) +<li>Rhesus (<a href="/cgi-bin/hgTracks?db=rheMac10">rheMac10</a>) +<li>Macaque (<a href="/cgi-bin/hgTracks?db=macFas5">macFas5</a>) +<li>Sheep (<a href="/cgi-bin/hgTracks?db=oviAri4">oviAri4</a>) +<li>Cat (<a href="/cgi-bin/hgTracks?db=felCat9">felCat9</a>) +</ul> + <a name="041522"></a> <h2>Apr. 15, 2022 DECIPHER variants track for human (hg38)</h2> <p> We are pleased to announce the release of two DECIPHER variant tracks, <a href="/cgi-bin/hgTrackUi?db=hg38&c=chrX&g=decipher">DECIPHER CNVs</a> and <a href="/cgi-bin/hgTrackUi?db=hg38&c=chrX&g=decipherSnvs">DECIPHER SNVs</a>, available for human (GRCh38/hg38)</a>. The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. <b>Mouseover</b> on items shows variant details, clinical interpretation, and associated conditions. Further information on each variant is displayed on the details page by a click onto any variant. </p> <p> For the <b>CNVs track</b>, the entries are colored by the <b>type of variant</b>: <ul>