6cfdc4a871b565db2b9152612d147877b4a9783b hiram Tue Apr 19 12:52:47 2022 -0700 add link to blog post refs #29237 diff --git src/hg/gar/garTable.sh src/hg/gar/garTable.sh index 5ed7b82..966209a 100755 --- src/hg/gar/garTable.sh +++ src/hg/gar/garTable.sh @@ -66,33 +66,34 @@ <p>We are working on adding a search function to this page. Until then, please use the "find" feature of your Browser (commonly CTRL+F). <button onclick='gar.showAll(true)'>(turn on all items for search)</button> </p> <p>After searching the page, if you do not find the assembly you are interested in, you may request it using the <em>"Can't find your assembly?"</em> button at the top of the page. Complete the request form (including the NCBI GenBank or RefSeq assembly accession identifier). You will be notified by email when your assembly is available for viewing in the UCSC Genome Browser. This can take up to three weeks. The assembly browser will include the following annotation tracks: Assembly mapping, Base position, Gaps, GC Percent, Restriction Enzymes, Tandem Duplications, CpG Islands, RefSeq mRNAs, Repeat Masking, and, if available: NCBI RefSeq Genes and Ensembl Genes. </p> <p>This page is optimized for use in Firefox and Safari. +</p> +<p>For more details on using this page, please see this <a href='https://genome-blog.soe.ucsc.edu/blog/2022/04/12/genark-hubs-part-4/' target=_blank>blog post</a>. </p>\n" - cut -d' ' -f3,5 \ /cluster/home/hiram/kent/src/hg/makeDb/doc/asmHubs/master.run.list \ | sort | awk '{printf "%s\t%s\n", $1, $2};' > asmId.sciName sort -k1,1 -u \ /cluster/home/hiram/kent/src/hg/makeDb/doc/*AsmHub/*.orderList.tsv \ > asmId.commonName; sort -u /hive/data/outside/ncbi/genomes/reports/newAsm/*.suppressed.asmId.list \ > asmId.suppressed.list join -t$'\t' asmId.sciName asmId.commonName > asmId.sciName.commonName $srcDir/garTable.pl