652d4ef894e0ad94ea0ee1be0f2b54e5ad3398c7 lrnassar Wed Apr 20 09:54:20 2022 -0700 Tweaking visibility and setting maxWindowCoverage which now acts like maxItems, refs #29031 diff --git src/hg/makeDb/trackDb/trackDb.ra src/hg/makeDb/trackDb/trackDb.ra index 165e189..59979ea 100644 --- src/hg/makeDb/trackDb/trackDb.ra +++ src/hg/makeDb/trackDb/trackDb.ra @@ -3032,33 +3032,34 @@ shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly track tantan shortLabel tantan Repeats longLabel Repeats by tantan group varRep visibility hide type bed 3 . track evaSnp shortLabel EVA SNP Release 3 longLabel Short Genetic Variants from European Variant Archive Release 3 type bigBed 9 + group varRep -visibility pack +visibility dense itemRgb on mouseOver $ucscClass $aaChange bigDataUrl /gbdb/$D/bbi/evaSnp.bb url https://www.ebi.ac.uk/eva/?variant&accessionID=$$ filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration filterLabel.varClass Variant class from EVA SO term filterLabel.ucscClass Functional effect per UCSC Variant Annotation filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant filterType.ucscClass multipleListOnlyOr filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants filterLabel.itemRgb General variant types by color grouping +maxWindowCoverage 1000000 pennantIcon New red ../goldenPath/newsarch.html#XX "Released Xxx. xx, 2022" searchTable evaSnp searchType bigBed searchMethod exact padding 20