8fdef9e866ecc228bfe4ea54102d0079818f0366 braney Fri Apr 8 14:49:38 2022 -0700 let bedGraphToBigWig use chromAlias.bb as chromSizes file. Add tests to both bedGraphToBigWig and bedToBigBed diff --git src/utils/bedGraphToBigWig/tests/input/human.chromAlias.bed src/utils/bedGraphToBigWig/tests/input/human.chromAlias.bed new file mode 100644 index 0000000..6a7a914 --- /dev/null +++ src/utils/bedGraphToBigWig/tests/input/human.chromAlias.bed @@ -0,0 +1,638 @@ +chr1 0 248956422 1 CM000663.2 NC_000001.11 chr1 +chr10 0 133797422 10 CM000672.2 NC_000010.11 chr10 +chr10_NT_187579v1_alt 0 181496 KI270824.1 NT_187579.1 chr10_NT_187579v1_alt +chr10_NT_187580v1_alt 0 188315 KI270825.1 NT_187580.1 chr10_NT_187580v1_alt +chr10_NW_003315934v1_alt 0 179254 GL383545.1 NW_003315934.1 chr10_NW_003315934v1_alt +chr10_NW_003315935v1_alt 0 309802 GL383546.1 NW_003315935.1 chr10_NW_003315935v1_alt +chr10_NW_009646202v1_alt 0 277797 KN196480.1 NW_009646202.1 chr10_NW_009646202v1_alt +chr10_NW_011332692v1_alt 0 14347 KN538365.1 NW_011332692.1 chr10_NW_011332692v1_alt +chr10_NW_011332693v1_alt 0 85284 KN538366.1 NW_011332693.1 chr10_NW_011332693v1_alt +chr10_NW_011332694v1_alt 0 420164 KN538367.1 NW_011332694.1 chr10_NW_011332694v1_alt +chr10_NW_013171806v1_alt 0 185507 KQ090020.1 NW_013171806.1 chr10_NW_013171806v1_alt +chr10_NW_013171807v1_alt 0 264545 KQ090021.1 NW_013171807.1 chr10_NW_013171807v1_alt +chr10_NW_021160000v1_alt 0 454963 ML143354.1 NW_021160000.1 chr10_NW_021160000v1_alt +chr10_NW_021160001v1_alt 0 292944 ML143355.1 NW_021160001.1 chr10_NW_021160001v1_alt +chr11 0 135086622 11 CM000673.2 NC_000011.10 chr11 +chr11_NT_187376v1_random 0 100316 KI270721.1 NT_187376.1 chr11_NT_187376v1_random +chr11_NT_187581v1_alt 0 186169 KI270826.1 NT_187581.1 chr11_NT_187581v1_alt +chr11_NT_187582v1_alt 0 67707 KI270827.1 NT_187582.1 chr11_NT_187582v1_alt +chr11_NT_187583v1_alt 0 204059 KI270829.1 NT_187583.1 chr11_NT_187583v1_alt +chr11_NT_187584v1_alt 0 177092 KI270830.1 NT_187584.1 chr11_NT_187584v1_alt +chr11_NT_187585v1_alt 0 296895 KI270831.1 NT_187585.1 chr11_NT_187585v1_alt +chr11_NT_187586v1_alt 0 210133 KI270832.1 NT_187586.1 chr11_NT_187586v1_alt +chr11_NT_187656v1_alt 0 106711 KI270902.1 NT_187656.1 chr11_NT_187656v1_alt +chr11_NT_187657v1_alt 0 214625 KI270903.1 NT_187657.1 chr11_NT_187657v1_alt +chr11_NT_187681v1_alt 0 218612 KI270927.1 NT_187681.1 chr11_NT_187681v1_alt +chr11_NW_003315936v1_alt 0 154407 GL383547.1 NW_003315936.1 chr11_NW_003315936v1_alt +chr11_NW_003871073v1_alt 0 200998 JH159136.1 NW_003871073.1 chr11_NW_003871073v1_alt +chr11_NW_003871074v1_alt 0 191409 JH159137.1 NW_003871074.1 chr11_NW_003871074v1_alt +chr11_NW_009646203v1_alt 0 108875 KN196481.1 NW_009646203.1 chr11_NW_009646203v1_alt +chr11_NW_011332695v1_alt 0 203552 KN538368.1 NW_011332695.1 chr11_NW_011332695v1_alt +chr11_NW_013171808v1_alt 0 181958 KQ090022.1 NW_013171808.1 chr11_NW_013171808v1_alt +chr11_NW_015148966v1_alt 0 196940 KQ759759.1 NW_015148966.1 chr11_NW_015148966v1_alt +chr11_NW_017363816v1_alt 0 140877 KV766195.1 NW_017363816.1 chr11_NW_017363816v1_alt +chr11_NW_019805495v1_alt 0 305244 KZ559108.1 NW_019805495.1 chr11_NW_019805495v1_alt +chr11_NW_019805496v1_alt 0 279644 KZ559109.1 NW_019805496.1 chr11_NW_019805496v1_alt +chr11_NW_019805497v1_alt 0 301637 KZ559110.1 NW_019805497.1 chr11_NW_019805497v1_alt +chr11_NW_019805498v1_alt 0 181167 KZ559111.1 NW_019805498.1 chr11_NW_019805498v1_alt +chr11_NW_021160002v1_alt 0 45257 ML143356.1 NW_021160002.1 chr11_NW_021160002v1_alt +chr11_NW_021160003v1_alt 0 165419 ML143357.1 NW_021160003.1 chr11_NW_021160003v1_alt +chr11_NW_021160004v1_alt 0 270122 ML143358.1 NW_021160004.1 chr11_NW_021160004v1_alt +chr11_NW_021160005v1_alt 0 217075 ML143359.1 NW_021160005.1 chr11_NW_021160005v1_alt +chr11_NW_021160006v1_alt 0 170928 ML143360.1 NW_021160006.1 chr11_NW_021160006v1_alt +chr12 0 133275309 12 CM000674.2 NC_000012.12 chr12 +chr12_NT_187587v1_alt 0 238139 KI270835.1 NT_187587.1 chr12_NT_187587v1_alt +chr12_NT_187588v1_alt 0 40090 KI270837.1 NT_187588.1 chr12_NT_187588v1_alt +chr12_NT_187589v1_alt 0 76061 KI270833.1 NT_187589.1 chr12_NT_187589v1_alt +chr12_NT_187590v1_alt 0 119498 KI270834.1 NT_187590.1 chr12_NT_187590v1_alt +chr12_NT_187591v1_alt 0 56134 KI270836.1 NT_187591.1 chr12_NT_187591v1_alt +chr12_NT_187658v1_alt 0 572349 KI270904.1 NT_187658.1 chr12_NT_187658v1_alt +chr12_NW_003315938v1_alt 0 120804 GL383549.1 NW_003315938.1 chr12_NW_003315938v1_alt +chr12_NW_003315939v2_alt 0 169178 GL383550.2 NW_003315939.2 chr12_NW_003315939v2_alt +chr12_NW_003315940v1_alt 0 184319 GL383551.1 NW_003315940.1 chr12_NW_003315940v1_alt +chr12_NW_003315941v1_alt 0 138655 GL383552.1 NW_003315941.1 chr12_NW_003315941v1_alt +chr12_NW_003315942v2_alt 0 152874 GL383553.2 NW_003315942.2 chr12_NW_003315942v2_alt +chr12_NW_003571049v1_alt 0 167313 GL877875.1 NW_003571049.1 chr12_NW_003571049v1_alt +chr12_NW_003571050v1_alt 0 408271 GL877876.1 NW_003571050.1 chr12_NW_003571050v1_alt +chr12_NW_009646204v1_alt 0 211377 KN196482.1 NW_009646204.1 chr12_NW_009646204v1_alt +chr12_NW_011332696v1_alt 0 541038 KN538369.1 NW_011332696.1 chr12_NW_011332696v1_alt +chr12_NW_011332697v1_alt 0 86533 KN538370.1 NW_011332697.1 chr12_NW_011332697v1_alt +chr12_NW_013171809v1_alt 0 109323 KQ090023.1 NW_013171809.1 chr12_NW_013171809v1_alt +chr12_NW_015148967v1_alt 0 315610 KQ759760.1 NW_015148967.1 chr12_NW_015148967v1_alt +chr12_NW_018654718v1_alt 0 1046838 KZ208916.1 NW_018654718.1 chr12_NW_018654718v1_alt +chr12_NW_018654719v1_alt 0 64689 KZ208917.1 NW_018654719.1 chr12_NW_018654719v1_alt +chr12_NW_018654720v1_alt 0 174808 KZ208918.1 NW_018654720.1 chr12_NW_018654720v1_alt +chr12_NW_019805499v1_alt 0 154139 KZ559112.1 NW_019805499.1 chr12_NW_019805499v1_alt +chr12_NW_021160007v1_alt 0 297568 ML143361.1 NW_021160007.1 chr12_NW_021160007v1_alt +chr12_NW_021160008v1_alt 0 192531 ML143362.1 NW_021160008.1 chr12_NW_021160008v1_alt +chr13 0 114364328 13 CM000675.2 NC_000013.11 chr13 +chr13_NT_187592v1_alt 0 306913 KI270838.1 NT_187592.1 chr13_NT_187592v1_alt +chr13_NT_187593v1_alt 0 180306 KI270839.1 NT_187593.1 chr13_NT_187593v1_alt +chr13_NT_187594v1_alt 0 191684 KI270840.1 NT_187594.1 chr13_NT_187594v1_alt +chr13_NT_187595v1_alt 0 169134 KI270841.1 NT_187595.1 chr13_NT_187595v1_alt +chr13_NT_187596v1_alt 0 37287 KI270842.1 NT_187596.1 chr13_NT_187596v1_alt +chr13_NT_187597v1_alt 0 103832 KI270843.1 NT_187597.1 chr13_NT_187597v1_alt +chr13_NW_009646205v1_alt 0 35455 KN196483.1 NW_009646205.1 chr13_NW_009646205v1_alt +chr13_NW_011332698v1_alt 0 206320 KN538371.1 NW_011332698.1 chr13_NW_011332698v1_alt +chr13_NW_011332699v1_alt 0 356766 KN538372.1 NW_011332699.1 chr13_NW_011332699v1_alt +chr13_NW_011332700v1_alt 0 148762 KN538373.1 NW_011332700.1 chr13_NW_011332700v1_alt +chr13_NW_013171810v1_alt 0 168146 KQ090024.1 NW_013171810.1 chr13_NW_013171810v1_alt +chr13_NW_013171811v1_alt 0 123480 KQ090025.1 NW_013171811.1 chr13_NW_013171811v1_alt +chr13_NW_021160009v1_alt 0 7309 ML143363.1 NW_021160009.1 chr13_NW_021160009v1_alt +chr13_NW_021160010v1_alt 0 158944 ML143364.1 NW_021160010.1 chr13_NW_021160010v1_alt +chr13_NW_021160011v1_alt 0 65394 ML143365.1 NW_021160011.1 chr13_NW_021160011v1_alt +chr13_NW_021160012v1_alt 0 409912 ML143366.1 NW_021160012.1 chr13_NW_021160012v1_alt +chr14 0 107043718 14 CM000676.2 NC_000014.9 chr14 +chr14_NT_113796v3_random 0 201709 GL000009.2 NT_113796.3 chr14_NT_113796v3_random +chr14_NT_113888v1_random 0 191469 GL000194.1 NT_113888.1 chr14_NT_113888v1_random +chr14_NT_167219v1_random 0 211173 GL000225.1 NT_167219.1 chr14_NT_167219v1_random +chr14_NT_187377v1_random 0 194050 KI270722.1 NT_187377.1 chr14_NT_187377v1_random +chr14_NT_187378v1_random 0 38115 KI270723.1 NT_187378.1 chr14_NT_187378v1_random +chr14_NT_187379v1_random 0 39555 KI270724.1 NT_187379.1 chr14_NT_187379v1_random +chr14_NT_187380v1_random 0 172810 KI270725.1 NT_187380.1 chr14_NT_187380v1_random +chr14_NT_187381v1_random 0 43739 KI270726.1 NT_187381.1 chr14_NT_187381v1_random +chr14_NT_187598v1_alt 0 322166 KI270844.1 NT_187598.1 chr14_NT_187598v1_alt +chr14_NT_187599v1_alt 0 180703 KI270845.1 NT_187599.1 chr14_NT_187599v1_alt +chr14_NT_187600v1_alt 0 1351393 KI270846.1 NT_187600.1 chr14_NT_187600v1_alt +chr14_NT_187601v1_alt 0 1511111 KI270847.1 NT_187601.1 chr14_NT_187601v1_alt +chr14_NW_018654721v1_alt 0 171798 KZ208919.1 NW_018654721.1 chr14_NW_018654721v1_alt +chr14_NW_018654722v1_alt 0 690932 KZ208920.1 NW_018654722.1 chr14_NW_018654722v1_alt +chr14_NW_021160013v1_alt 0 399183 ML143367.1 NW_021160013.1 chr14_NW_021160013v1_alt +chr14_NW_021160014v1_alt 0 264228 ML143368.1 NW_021160014.1 chr14_NW_021160014v1_alt +chr15 0 101991189 15 CM000677.2 NC_000015.10 chr15 +chr15_NT_187382v1_random 0 448248 KI270727.1 NT_187382.1 chr15_NT_187382v1_random +chr15_NT_187602v1_alt 0 478999 KI270852.1 NT_187602.1 chr15_NT_187602v1_alt +chr15_NT_187603v1_alt 0 327382 KI270848.1 NT_187603.1 chr15_NT_187603v1_alt +chr15_NT_187604v1_alt 0 263054 KI270851.1 NT_187604.1 chr15_NT_187604v1_alt +chr15_NT_187605v1_alt 0 244917 KI270849.1 NT_187605.1 chr15_NT_187605v1_alt +chr15_NT_187606v1_alt 0 430880 KI270850.1 NT_187606.1 chr15_NT_187606v1_alt +chr15_NT_187659v1_alt 0 196384 KI270906.1 NT_187659.1 chr15_NT_187659v1_alt +chr15_NT_187660v1_alt 0 5161414 KI270905.1 NT_187660.1 chr15_NT_187660v1_alt +chr15_NW_003315943v1_alt 0 296527 GL383554.1 NW_003315943.1 chr15_NW_003315943v1_alt +chr15_NW_003315944v2_alt 0 388773 GL383555.2 NW_003315944.2 chr15_NW_003315944v2_alt +chr15_NW_012132920v1_alt 0 2365364 KQ031389.1 NW_012132920.1 chr15_NW_012132920v1_alt +chr15_NW_021160015v1_alt 0 97763 ML143369.1 NW_021160015.1 chr15_NW_021160015v1_alt +chr15_NW_021160016v1_alt 0 369264 ML143370.1 NW_021160016.1 chr15_NW_021160016v1_alt +chr15_NW_021160017v1_alt 0 5500449 ML143371.1 NW_021160017.1 chr15_NW_021160017v1_alt +chr15_NW_021160018v1_alt 0 396515 ML143372.1 NW_021160018.1 chr15_NW_021160018v1_alt +chr16 0 90338345 16 CM000678.2 NC_000016.10 chr16 +chr16_NT_187383v1_random 0 1872759 KI270728.1 NT_187383.1 chr16_NT_187383v1_random +chr16_NT_187607v1_alt 0 2659700 KI270853.1 NT_187607.1 chr16_NT_187607v1_alt +chr16_NT_187608v1_alt 0 232857 KI270855.1 NT_187608.1 chr16_NT_187608v1_alt +chr16_NT_187609v1_alt 0 63982 KI270856.1 NT_187609.1 chr16_NT_187609v1_alt +chr16_NT_187610v1_alt 0 134193 KI270854.1 NT_187610.1 chr16_NT_187610v1_alt +chr16_NW_003315945v1_alt 0 192462 GL383556.1 NW_003315945.1 chr16_NW_003315945v1_alt +chr16_NW_003315946v1_alt 0 89672 GL383557.1 NW_003315946.1 chr16_NW_003315946v1_alt +chr16_NW_012132921v1_alt 0 169136 KQ031390.1 NW_012132921.1 chr16_NW_012132921v1_alt +chr16_NW_013171812v1_alt 0 59016 KQ090026.1 NW_013171812.1 chr16_NW_013171812v1_alt +chr16_NW_013171813v1_alt 0 267463 KQ090027.1 NW_013171813.1 chr16_NW_013171813v1_alt +chr16_NW_017852933v1_alt 0 1927115 KV880768.1 NW_017852933.1 chr16_NW_017852933v1_alt +chr16_NW_018654723v1_alt 0 78609 KZ208921.1 NW_018654723.1 chr16_NW_018654723v1_alt +chr16_NW_019805500v1_alt 0 480415 KZ559113.1 NW_019805500.1 chr16_NW_019805500v1_alt +chr16_NW_021160019v1_alt 0 270967 ML143373.1 NW_021160019.1 chr16_NW_021160019v1_alt +chr17 0 83257441 17 CM000679.2 NC_000017.11 chr17 +chr17_NT_113930v2_random 0 185591 GL000205.2 NT_113930.2 chr17_NT_113930v2_random +chr17_NT_167251v2_alt 0 1821992 GL000258.2 NT_167251.2 chr17_NT_167251v2_alt +chr17_NT_187384v1_random 0 280839 KI270729.1 NT_187384.1 chr17_NT_187384v1_random +chr17_NT_187385v1_random 0 112551 KI270730.1 NT_187385.1 chr17_NT_187385v1_random +chr17_NT_187611v1_alt 0 196688 KI270861.1 NT_187611.1 chr17_NT_187611v1_alt +chr17_NT_187612v1_alt 0 178921 KI270860.1 NT_187612.1 chr17_NT_187612v1_alt +chr17_NT_187613v1_alt 0 391357 KI270862.1 NT_187613.1 chr17_NT_187613v1_alt +chr17_NT_187614v1_alt 0 2877074 KI270857.1 NT_187614.1 chr17_NT_187614v1_alt +chr17_NT_187615v1_alt 0 235827 KI270858.1 NT_187615.1 chr17_NT_187615v1_alt +chr17_NT_187616v1_alt 0 108763 KI270859.1 NT_187616.1 chr17_NT_187616v1_alt +chr17_NT_187661v1_alt 0 325800 KI270909.1 NT_187661.1 chr17_NT_187661v1_alt +chr17_NT_187662v1_alt 0 137721 KI270907.1 NT_187662.1 chr17_NT_187662v1_alt +chr17_NT_187663v1_alt 0 1423190 KI270908.1 NT_187663.1 chr17_NT_187663v1_alt +chr17_NT_187664v1_alt 0 157099 KI270910.1 NT_187664.1 chr17_NT_187664v1_alt +chr17_NW_003315952v3_alt 0 375691 GL383563.3 NW_003315952.3 chr17_NW_003315952v3_alt +chr17_NW_003315953v2_alt 0 133151 GL383564.2 NW_003315953.2 chr17_NW_003315953v2_alt +chr17_NW_003315954v1_alt 0 223995 GL383565.1 NW_003315954.1 chr17_NW_003315954v1_alt +chr17_NW_003315955v1_alt 0 90219 GL383566.1 NW_003315955.1 chr17_NW_003315955v1_alt +chr17_NW_003871091v1_alt 0 278131 JH159146.1 NW_003871091.1 chr17_NW_003871091v1_alt +chr17_NW_003871092v1_alt 0 70345 JH159147.1 NW_003871092.1 chr17_NW_003871092v1_alt +chr17_NW_003871093v1_alt 0 88070 JH159148.1 NW_003871093.1 chr17_NW_003871093v1_alt +chr17_NW_016107299v1_alt 0 154723 KV575245.1 NW_016107299.1 chr17_NW_016107299v1_alt +chr17_NW_017363817v1_alt 0 281919 KV766196.1 NW_017363817.1 chr17_NW_017363817v1_alt +chr17_NW_017363818v1_alt 0 246895 KV766197.1 NW_017363818.1 chr17_NW_017363818v1_alt +chr17_NW_017363819v1_alt 0 276292 KV766198.1 NW_017363819.1 chr17_NW_017363819v1_alt +chr17_NW_019805501v1_alt 0 116753 KZ559114.1 NW_019805501.1 chr17_NW_019805501v1_alt +chr17_NW_021160020v1_alt 0 137908 ML143374.1 NW_021160020.1 chr17_NW_021160020v1_alt +chr17_NW_021160021v1_alt 0 56695 ML143375.1 NW_021160021.1 chr17_NW_021160021v1_alt +chr18 0 80373285 18 CM000680.2 NC_000018.10 chr18 +chr18_NT_187617v1_alt 0 167999 KI270863.1 NT_187617.1 chr18_NT_187617v1_alt +chr18_NT_187618v1_alt 0 111737 KI270864.1 NT_187618.1 chr18_NT_187618v1_alt +chr18_NT_187665v1_alt 0 174061 KI270912.1 NT_187665.1 chr18_NT_187665v1_alt +chr18_NT_187666v1_alt 0 157710 KI270911.1 NT_187666.1 chr18_NT_187666v1_alt +chr18_NW_003315956v1_alt 0 289831 GL383567.1 NW_003315956.1 chr18_NW_003315956v1_alt +chr18_NW_003315957v1_alt 0 104552 GL383568.1 NW_003315957.1 chr18_NW_003315957v1_alt +chr18_NW_003315958v1_alt 0 167950 GL383569.1 NW_003315958.1 chr18_NW_003315958v1_alt +chr18_NW_003315959v1_alt 0 164789 GL383570.1 NW_003315959.1 chr18_NW_003315959v1_alt +chr18_NW_003315960v1_alt 0 198278 GL383571.1 NW_003315960.1 chr18_NW_003315960v1_alt +chr18_NW_003315961v1_alt 0 159547 GL383572.1 NW_003315961.1 chr18_NW_003315961v1_alt +chr18_NW_013171814v1_alt 0 407387 KQ090028.1 NW_013171814.1 chr18_NW_013171814v1_alt +chr18_NW_014040928v1_alt 0 205101 KQ458385.1 NW_014040928.1 chr18_NW_014040928v1_alt +chr18_NW_018654724v1_alt 0 93070 KZ208922.1 NW_018654724.1 chr18_NW_018654724v1_alt +chr18_NW_019805502v1_alt 0 230843 KZ559115.1 NW_019805502.1 chr18_NW_019805502v1_alt +chr18_NW_019805503v1_alt 0 163186 KZ559116.1 NW_019805503.1 chr18_NW_019805503v1_alt +chr19 0 58617616 19 CM000681.2 NC_000019.10 chr19 +chr19_NT_113949v2_alt 0 177381 GL000209.2 NT_113949.2 chr19_NT_113949v2_alt +chr19_NT_187619v1_alt 0 43156 KI270866.1 NT_187619.1 chr19_NT_187619v1_alt +chr19_NT_187620v1_alt 0 233762 KI270867.1 NT_187620.1 chr19_NT_187620v1_alt +chr19_NT_187621v1_alt 0 52969 KI270865.1 NT_187621.1 chr19_NT_187621v1_alt +chr19_NT_187622v1_alt 0 61734 KI270868.1 NT_187622.1 chr19_NT_187622v1_alt +chr19_NT_187636v1_alt 0 248807 KI270882.1 NT_187636.1 chr19_NT_187636v1_alt +chr19_NT_187637v1_alt 0 170399 KI270883.1 NT_187637.1 chr19_NT_187637v1_alt +chr19_NT_187638v1_alt 0 157053 KI270884.1 NT_187638.1 chr19_NT_187638v1_alt +chr19_NT_187639v1_alt 0 171027 KI270885.1 NT_187639.1 chr19_NT_187639v1_alt +chr19_NT_187640v1_alt 0 204239 KI270886.1 NT_187640.1 chr19_NT_187640v1_alt +chr19_NT_187641v1_alt 0 209512 KI270887.1 NT_187641.1 chr19_NT_187641v1_alt +chr19_NT_187642v1_alt 0 155532 KI270888.1 NT_187642.1 chr19_NT_187642v1_alt +chr19_NT_187643v1_alt 0 170698 KI270889.1 NT_187643.1 chr19_NT_187643v1_alt +chr19_NT_187644v1_alt 0 184499 KI270890.1 NT_187644.1 chr19_NT_187644v1_alt +chr19_NT_187645v1_alt 0 170680 KI270891.1 NT_187645.1 chr19_NT_187645v1_alt +chr19_NT_187668v1_alt 0 205194 KI270914.1 NT_187668.1 chr19_NT_187668v1_alt +chr19_NT_187669v1_alt 0 170665 KI270915.1 NT_187669.1 chr19_NT_187669v1_alt +chr19_NT_187670v1_alt 0 184516 KI270916.1 NT_187670.1 chr19_NT_187670v1_alt +chr19_NT_187671v1_alt 0 190932 KI270917.1 NT_187671.1 chr19_NT_187671v1_alt +chr19_NT_187672v1_alt 0 123111 KI270918.1 NT_187672.1 chr19_NT_187672v1_alt +chr19_NT_187673v1_alt 0 170701 KI270919.1 NT_187673.1 chr19_NT_187673v1_alt +chr19_NT_187674v1_alt 0 198005 KI270920.1 NT_187674.1 chr19_NT_187674v1_alt +chr19_NT_187675v1_alt 0 282224 KI270921.1 NT_187675.1 chr19_NT_187675v1_alt +chr19_NT_187676v1_alt 0 187935 KI270922.1 NT_187676.1 chr19_NT_187676v1_alt +chr19_NT_187677v1_alt 0 189352 KI270923.1 NT_187677.1 chr19_NT_187677v1_alt +chr19_NT_187683v1_alt 0 186203 KI270929.1 NT_187683.1 chr19_NT_187683v1_alt +chr19_NT_187684v1_alt 0 200773 KI270930.1 NT_187684.1 chr19_NT_187684v1_alt +chr19_NT_187685v1_alt 0 170148 KI270931.1 NT_187685.1 chr19_NT_187685v1_alt +chr19_NT_187686v1_alt 0 215732 KI270932.1 NT_187686.1 chr19_NT_187686v1_alt +chr19_NT_187687v1_alt 0 170537 KI270933.1 NT_187687.1 chr19_NT_187687v1_alt +chr19_NT_187693v1_alt 0 1066800 KI270938.1 NT_187693.1 chr19_NT_187693v1_alt +chr19_NW_003315962v1_alt 0 385657 GL383573.1 NW_003315962.1 chr19_NW_003315962v1_alt +chr19_NW_003315963v1_alt 0 155864 GL383574.1 NW_003315963.1 chr19_NW_003315963v1_alt +chr19_NW_003315964v2_alt 0 170222 GL383575.2 NW_003315964.2 chr19_NW_003315964v2_alt +chr19_NW_003315965v1_alt 0 188024 GL383576.1 NW_003315965.1 chr19_NW_003315965v1_alt +chr19_NW_003571054v1_alt 0 987716 GL949746.1 NW_003571054.1 chr19_NW_003571054v1_alt +chr19_NW_003571055v2_alt 0 729520 GL949747.2 NW_003571055.2 chr19_NW_003571055v2_alt +chr19_NW_003571056v2_alt 0 1064304 GL949748.2 NW_003571056.2 chr19_NW_003571056v2_alt +chr19_NW_003571057v2_alt 0 1091841 GL949749.2 NW_003571057.2 chr19_NW_003571057v2_alt +chr19_NW_003571058v2_alt 0 1066390 GL949750.2 NW_003571058.2 chr19_NW_003571058v2_alt +chr19_NW_003571059v2_alt 0 1002683 GL949751.2 NW_003571059.2 chr19_NW_003571059v2_alt +chr19_NW_003571060v1_alt 0 987100 GL949752.1 NW_003571060.1 chr19_NW_003571060v1_alt +chr19_NW_003571061v2_alt 0 796479 GL949753.2 NW_003571061.2 chr19_NW_003571061v2_alt +chr19_NW_009646206v1_alt 0 370917 KN196484.1 NW_009646206.1 chr19_NW_009646206v1_alt +chr19_NW_014040929v1_alt 0 405389 KQ458386.1 NW_014040929.1 chr19_NW_014040929v1_alt +chr19_NW_016107300v1_alt 0 163926 KV575246.1 NW_016107300.1 chr19_NW_016107300v1_alt +chr19_NW_016107301v1_alt 0 170206 KV575247.1 NW_016107301.1 chr19_NW_016107301v1_alt +chr19_NW_016107302v1_alt 0 168131 KV575248.1 NW_016107302.1 chr19_NW_016107302v1_alt +chr19_NW_016107303v1_alt 0 293522 KV575249.1 NW_016107303.1 chr19_NW_016107303v1_alt +chr19_NW_016107304v1_alt 0 241058 KV575250.1 NW_016107304.1 chr19_NW_016107304v1_alt +chr19_NW_016107305v1_alt 0 159285 KV575251.1 NW_016107305.1 chr19_NW_016107305v1_alt +chr19_NW_016107306v1_alt 0 178197 KV575252.1 NW_016107306.1 chr19_NW_016107306v1_alt +chr19_NW_016107307v1_alt 0 166713 KV575253.1 NW_016107307.1 chr19_NW_016107307v1_alt +chr19_NW_016107308v1_alt 0 99845 KV575254.1 NW_016107308.1 chr19_NW_016107308v1_alt +chr19_NW_016107309v1_alt 0 161095 KV575255.1 NW_016107309.1 chr19_NW_016107309v1_alt +chr19_NW_016107310v1_alt 0 223118 KV575256.1 NW_016107310.1 chr19_NW_016107310v1_alt +chr19_NW_016107311v1_alt 0 100553 KV575257.1 NW_016107311.1 chr19_NW_016107311v1_alt +chr19_NW_016107312v1_alt 0 156965 KV575258.1 NW_016107312.1 chr19_NW_016107312v1_alt +chr19_NW_016107313v1_alt 0 171263 KV575259.1 NW_016107313.1 chr19_NW_016107313v1_alt +chr19_NW_016107314v1_alt 0 145691 KV575260.1 NW_016107314.1 chr19_NW_016107314v1_alt +chr19_NW_021160022v1_alt 0 493165 ML143376.1 NW_021160022.1 chr19_NW_021160022v1_alt +chr1_NT_187361v1_random 0 175055 KI270706.1 NT_187361.1 chr1_NT_187361v1_random +chr1_NT_187362v1_random 0 32032 KI270707.1 NT_187362.1 chr1_NT_187362v1_random +chr1_NT_187363v1_random 0 127682 KI270708.1 NT_187363.1 chr1_NT_187363v1_random +chr1_NT_187364v1_random 0 66860 KI270709.1 NT_187364.1 chr1_NT_187364v1_random +chr1_NT_187365v1_random 0 40176 KI270710.1 NT_187365.1 chr1_NT_187365v1_random +chr1_NT_187366v1_random 0 42210 KI270711.1 NT_187366.1 chr1_NT_187366v1_random +chr1_NT_187367v1_random 0 176043 KI270712.1 NT_187367.1 chr1_NT_187367v1_random +chr1_NT_187368v1_random 0 40745 KI270713.1 NT_187368.1 chr1_NT_187368v1_random +chr1_NT_187369v1_random 0 41717 KI270714.1 NT_187369.1 chr1_NT_187369v1_random +chr1_NT_187514v1_alt 0 109528 KI270760.1 NT_187514.1 chr1_NT_187514v1_alt +chr1_NT_187515v1_alt 0 354444 KI270762.1 NT_187515.1 chr1_NT_187515v1_alt +chr1_NT_187516v1_alt 0 425601 KI270759.1 NT_187516.1 chr1_NT_187516v1_alt +chr1_NT_187517v1_alt 0 256271 KI270766.1 NT_187517.1 chr1_NT_187517v1_alt +chr1_NT_187518v1_alt 0 165834 KI270761.1 NT_187518.1 chr1_NT_187518v1_alt +chr1_NT_187519v1_alt 0 911658 KI270763.1 NT_187519.1 chr1_NT_187519v1_alt +chr1_NT_187520v1_alt 0 185285 KI270765.1 NT_187520.1 chr1_NT_187520v1_alt +chr1_NT_187521v1_alt 0 50258 KI270764.1 NT_187521.1 chr1_NT_187521v1_alt +chr1_NT_187646v1_alt 0 162212 KI270892.1 NT_187646.1 chr1_NT_187646v1_alt +chr1_NW_003315905v1_alt 0 182439 GL383518.1 NW_003315905.1 chr1_NW_003315905v1_alt +chr1_NW_003315906v1_alt 0 110268 GL383519.1 NW_003315906.1 chr1_NW_003315906v1_alt +chr1_NW_003315907v2_alt 0 366580 GL383520.2 NW_003315907.2 chr1_NW_003315907v2_alt +chr1_NW_009646194v1_alt 0 186494 KN196472.1 NW_009646194.1 chr1_NW_009646194v1_alt +chr1_NW_009646195v1_alt 0 166200 KN196473.1 NW_009646195.1 chr1_NW_009646195v1_alt +chr1_NW_009646196v1_alt 0 122022 KN196474.1 NW_009646196.1 chr1_NW_009646196v1_alt +chr1_NW_011332687v1_alt 0 460100 KN538360.1 NW_011332687.1 chr1_NW_011332687v1_alt +chr1_NW_011332688v1_alt 0 305542 KN538361.1 NW_011332688.1 chr1_NW_011332688v1_alt +chr1_NW_012132914v1_alt 0 467143 KQ031383.1 NW_012132914.1 chr1_NW_012132914v1_alt +chr1_NW_014040925v1_alt 0 141019 KQ458382.1 NW_014040925.1 chr1_NW_014040925v1_alt +chr1_NW_014040926v1_alt 0 349938 KQ458383.1 NW_014040926.1 chr1_NW_014040926v1_alt +chr1_NW_014040927v1_alt 0 212205 KQ458384.1 NW_014040927.1 chr1_NW_014040927v1_alt +chr1_NW_015495298v1_alt 0 278659 KQ983255.1 NW_015495298.1 chr1_NW_015495298v1_alt +chr1_NW_017852928v1_alt 0 551020 KV880763.1 NW_017852928.1 chr1_NW_017852928v1_alt +chr1_NW_018654706v1_alt 0 166136 KZ208904.1 NW_018654706.1 chr1_NW_018654706v1_alt +chr1_NW_018654707v1_alt 0 140355 KZ208905.1 NW_018654707.1 chr1_NW_018654707v1_alt +chr1_NW_018654708v1_alt 0 330031 KZ208906.1 NW_018654708.1 chr1_NW_018654708v1_alt +chr1_NW_019805487v1_alt 0 44955 KZ559100.1 NW_019805487.1 chr1_NW_019805487v1_alt +chr2 0 242193529 2 CM000664.2 NC_000002.12 chr2 +chr20 0 64444167 20 CM000682.2 NC_000020.11 chr20 +chr20_NT_187623v1_alt 0 118774 KI270869.1 NT_187623.1 chr20_NT_187623v1_alt +chr20_NT_187624v1_alt 0 183433 KI270870.1 NT_187624.1 chr20_NT_187624v1_alt +chr20_NT_187625v1_alt 0 58661 KI270871.1 NT_187625.1 chr20_NT_187625v1_alt +chr20_NW_003315966v2_alt 0 128386 GL383577.2 NW_003315966.2 chr20_NW_003315966v2_alt +chr21 0 46709983 21 CM000683.2 NC_000021.9 chr21 +chr21_NT_187626v1_alt 0 82692 KI270872.1 NT_187626.1 chr21_NT_187626v1_alt +chr21_NT_187627v1_alt 0 143900 KI270873.1 NT_187627.1 chr21_NT_187627v1_alt +chr21_NT_187628v1_alt 0 166743 KI270874.1 NT_187628.1 chr21_NT_187628v1_alt +chr21_NW_003315967v2_alt 0 63917 GL383578.2 NW_003315967.2 chr21_NW_003315967v2_alt +chr21_NW_003315968v2_alt 0 201197 GL383579.2 NW_003315968.2 chr21_NW_003315968v2_alt +chr21_NW_003315969v2_alt 0 74653 GL383580.2 NW_003315969.2 chr21_NW_003315969v2_alt +chr21_NW_003315970v2_alt 0 116689 GL383581.2 NW_003315970.2 chr21_NW_003315970v2_alt +chr21_NW_021160023v1_alt 0 519485 ML143377.1 NW_021160023.1 chr21_NW_021160023v1_alt +chr22 0 50818468 22 CM000684.2 NC_000022.11 chr22 +chr22_NT_187386v1_random 0 150754 KI270731.1 NT_187386.1 chr22_NT_187386v1_random +chr22_NT_187387v1_random 0 41543 KI270732.1 NT_187387.1 chr22_NT_187387v1_random +chr22_NT_187388v1_random 0 179772 KI270733.1 NT_187388.1 chr22_NT_187388v1_random +chr22_NT_187389v1_random 0 165050 KI270734.1 NT_187389.1 chr22_NT_187389v1_random +chr22_NT_187390v1_random 0 42811 KI270735.1 NT_187390.1 chr22_NT_187390v1_random +chr22_NT_187391v1_random 0 181920 KI270736.1 NT_187391.1 chr22_NT_187391v1_random +chr22_NT_187392v1_random 0 103838 KI270737.1 NT_187392.1 chr22_NT_187392v1_random +chr22_NT_187393v1_random 0 99375 KI270738.1 NT_187393.1 chr22_NT_187393v1_random +chr22_NT_187394v1_random 0 73985 KI270739.1 NT_187394.1 chr22_NT_187394v1_random +chr22_NT_187629v1_alt 0 259914 KI270875.1 NT_187629.1 chr22_NT_187629v1_alt +chr22_NT_187630v1_alt 0 263666 KI270876.1 NT_187630.1 chr22_NT_187630v1_alt +chr22_NT_187631v1_alt 0 101331 KI270877.1 NT_187631.1 chr22_NT_187631v1_alt +chr22_NT_187632v1_alt 0 186262 KI270878.1 NT_187632.1 chr22_NT_187632v1_alt +chr22_NT_187633v1_alt 0 304135 KI270879.1 NT_187633.1 chr22_NT_187633v1_alt +chr22_NT_187682v1_alt 0 176103 KI270928.1 NT_187682.1 chr22_NT_187682v1_alt +chr22_NW_003315971v2_alt 0 162811 GL383582.2 NW_003315971.2 chr22_NW_003315971v2_alt +chr22_NW_003315972v2_alt 0 96924 GL383583.2 NW_003315972.2 chr22_NW_003315972v2_alt +chr22_NW_004504305v1_alt 0 74013 KB663609.1 NW_004504305.1 chr22_NW_004504305v1_alt +chr22_NW_009646207v1_alt 0 156562 KN196485.1 NW_009646207.1 chr22_NW_009646207v1_alt +chr22_NW_009646208v1_alt 0 153027 KN196486.1 NW_009646208.1 chr22_NW_009646208v1_alt +chr22_NW_014040930v1_alt 0 155930 KQ458387.1 NW_014040930.1 chr22_NW_014040930v1_alt +chr22_NW_014040931v1_alt 0 174749 KQ458388.1 NW_014040931.1 chr22_NW_014040931v1_alt +chr22_NW_015148968v1_alt 0 145162 KQ759761.1 NW_015148968.1 chr22_NW_015148968v1_alt +chr22_NW_015148969v1_alt 0 101037 KQ759762.1 NW_015148969.1 chr22_NW_015148969v1_alt +chr22_NW_021160024v1_alt 0 461303 ML143378.1 NW_021160024.1 chr22_NW_021160024v1_alt +chr22_NW_021160025v1_alt 0 12295 ML143379.1 NW_021160025.1 chr22_NW_021160025v1_alt +chr22_NW_021160026v1_alt 0 412368 ML143380.1 NW_021160026.1 chr22_NW_021160026v1_alt +chr2_NT_187370v1_random 0 161471 KI270715.1 NT_187370.1 chr2_NT_187370v1_random +chr2_NT_187371v1_random 0 153799 KI270716.1 NT_187371.1 chr2_NT_187371v1_random +chr2_NT_187522v1_alt 0 120616 KI270769.1 NT_187522.1 chr2_NT_187522v1_alt +chr2_NT_187523v1_alt 0 161578 KI270767.1 NT_187523.1 chr2_NT_187523v1_alt +chr2_NT_187524v1_alt 0 133041 KI270772.1 NT_187524.1 chr2_NT_187524v1_alt +chr2_NT_187525v1_alt 0 136240 KI270770.1 NT_187525.1 chr2_NT_187525v1_alt +chr2_NT_187526v1_alt 0 70887 KI270773.1 NT_187526.1 chr2_NT_187526v1_alt +chr2_NT_187527v1_alt 0 174166 KI270776.1 NT_187527.1 chr2_NT_187527v1_alt +chr2_NT_187528v1_alt 0 110099 KI270768.1 NT_187528.1 chr2_NT_187528v1_alt +chr2_NT_187529v1_alt 0 223625 KI270774.1 NT_187529.1 chr2_NT_187529v1_alt +chr2_NT_187530v1_alt 0 110395 KI270771.1 NT_187530.1 chr2_NT_187530v1_alt +chr2_NT_187531v1_alt 0 138019 KI270775.1 NT_187531.1 chr2_NT_187531v1_alt +chr2_NT_187647v1_alt 0 161218 KI270893.1 NT_187647.1 chr2_NT_187647v1_alt +chr2_NT_187648v1_alt 0 214158 KI270894.1 NT_187648.1 chr2_NT_187648v1_alt +chr2_NW_003315908v1_alt 0 143390 GL383521.1 NW_003315908.1 chr2_NW_003315908v1_alt +chr2_NW_003315909v1_alt 0 123821 GL383522.1 NW_003315909.1 chr2_NW_003315909v1_alt +chr2_NW_003571033v2_alt 0 96131 GL582966.2 NW_003571033.2 chr2_NW_003571033v2_alt +chr2_NW_011332689v1_alt 0 208149 KN538362.1 NW_011332689.1 chr2_NW_011332689v1_alt +chr2_NW_011332690v1_alt 0 365499 KN538363.1 NW_011332690.1 chr2_NW_011332690v1_alt +chr2_NW_012132915v1_alt 0 481245 KQ031384.1 NW_012132915.1 chr2_NW_012132915v1_alt +chr2_NW_015495299v1_alt 0 535088 KQ983256.1 NW_015495299.1 chr2_NW_015495299v1_alt +chr2_NW_018654709v1_alt 0 181658 KZ208907.1 NW_018654709.1 chr2_NW_018654709v1_alt +chr2_NW_018654710v1_alt 0 140361 KZ208908.1 NW_018654710.1 chr2_NW_018654710v1_alt +chr2_NW_021159987v1_alt 0 145975 ML143341.1 NW_021159987.1 chr2_NW_021159987v1_alt +chr2_NW_021159988v1_alt 0 84043 ML143342.1 NW_021159988.1 chr2_NW_021159988v1_alt +chr3 0 198295559 3 CM000665.2 NC_000003.12 chr3 +chr3_NT_167215v1_random 0 155397 GL000221.1 NT_167215.1 chr3_NT_167215v1_random +chr3_NT_187532v1_alt 0 205312 KI270779.1 NT_187532.1 chr3_NT_187532v1_alt +chr3_NT_187533v1_alt 0 173649 KI270777.1 NT_187533.1 chr3_NT_187533v1_alt +chr3_NT_187534v1_alt 0 162429 KI270782.1 NT_187534.1 chr3_NT_187534v1_alt +chr3_NT_187535v1_alt 0 109187 KI270783.1 NT_187535.1 chr3_NT_187535v1_alt +chr3_NT_187536v1_alt 0 248252 KI270778.1 NT_187536.1 chr3_NT_187536v1_alt +chr3_NT_187537v1_alt 0 224108 KI270780.1 NT_187537.1 chr3_NT_187537v1_alt +chr3_NT_187538v1_alt 0 113034 KI270781.1 NT_187538.1 chr3_NT_187538v1_alt +chr3_NT_187539v1_alt 0 184404 KI270784.1 NT_187539.1 chr3_NT_187539v1_alt +chr3_NT_187649v1_alt 0 162896 KI270895.1 NT_187649.1 chr3_NT_187649v1_alt +chr3_NT_187678v1_alt 0 166540 KI270924.1 NT_187678.1 chr3_NT_187678v1_alt +chr3_NT_187688v1_alt 0 163458 KI270934.1 NT_187688.1 chr3_NT_187688v1_alt +chr3_NT_187689v1_alt 0 197351 KI270935.1 NT_187689.1 chr3_NT_187689v1_alt +chr3_NT_187690v1_alt 0 164170 KI270936.1 NT_187690.1 chr3_NT_187690v1_alt +chr3_NT_187691v1_alt 0 165607 KI270937.1 NT_187691.1 chr3_NT_187691v1_alt +chr3_NW_003315913v1_alt 0 180671 GL383526.1 NW_003315913.1 chr3_NW_003315913v1_alt +chr3_NW_003871060v2_alt 0 173151 JH636055.2 NW_003871060.2 chr3_NW_003871060v2_alt +chr3_NW_009646197v1_alt 0 451168 KN196475.1 NW_009646197.1 chr3_NW_009646197v1_alt +chr3_NW_009646198v1_alt 0 305979 KN196476.1 NW_009646198.1 chr3_NW_009646198v1_alt +chr3_NW_011332691v1_alt 0 415308 KN538364.1 NW_011332691.1 chr3_NW_011332691v1_alt +chr3_NW_012132916v1_alt 0 373699 KQ031385.1 NW_012132916.1 chr3_NW_012132916v1_alt +chr3_NW_012132917v1_alt 0 165718 KQ031386.1 NW_012132917.1 chr3_NW_012132917v1_alt +chr3_NW_017363813v1_alt 0 411654 KV766192.1 NW_017363813.1 chr3_NW_017363813v1_alt +chr3_NW_018654711v1_alt 0 175849 KZ208909.1 NW_018654711.1 chr3_NW_018654711v1_alt +chr3_NW_019805488v1_alt 0 164041 KZ559101.1 NW_019805488.1 chr3_NW_019805488v1_alt +chr3_NW_019805489v1_alt 0 197752 KZ559102.1 NW_019805489.1 chr3_NW_019805489v1_alt +chr3_NW_019805490v1_alt 0 302885 KZ559103.1 NW_019805490.1 chr3_NW_019805490v1_alt +chr3_NW_019805491v1_alt 0 105527 KZ559104.1 NW_019805491.1 chr3_NW_019805491v1_alt +chr3_NW_019805492v1_alt 0 195063 KZ559105.1 NW_019805492.1 chr3_NW_019805492v1_alt +chr3_NW_021159989v1_alt 0 215443 ML143343.1 NW_021159989.1 chr3_NW_021159989v1_alt +chr4 0 190214555 4 CM000666.2 NC_000004.12 chr4 +chr4_NT_113793v3_random 0 209709 GL000008.2 NT_113793.3 chr4_NT_113793v3_random +chr4_NT_167250v2_alt 0 586476 GL000257.2 NT_167250.2 chr4_NT_167250v2_alt +chr4_NT_187540v1_alt 0 220246 KI270790.1 NT_187540.1 chr4_NT_187540v1_alt +chr4_NT_187541v1_alt 0 111943 KI270787.1 NT_187541.1 chr4_NT_187541v1_alt +chr4_NT_187542v1_alt 0 119912 KI270785.1 NT_187542.1 chr4_NT_187542v1_alt +chr4_NT_187543v1_alt 0 244096 KI270786.1 NT_187543.1 chr4_NT_187543v1_alt +chr4_NT_187544v1_alt 0 158965 KI270788.1 NT_187544.1 chr4_NT_187544v1_alt +chr4_NT_187545v1_alt 0 205944 KI270789.1 NT_187545.1 chr4_NT_187545v1_alt +chr4_NT_187650v1_alt 0 378547 KI270896.1 NT_187650.1 chr4_NT_187650v1_alt +chr4_NT_187679v1_alt 0 555799 KI270925.1 NT_187679.1 chr4_NT_187679v1_alt +chr4_NW_003315914v1_alt 0 164536 GL383527.1 NW_003315914.1 chr4_NW_003315914v1_alt +chr4_NW_003315915v1_alt 0 376187 GL383528.1 NW_003315915.1 chr4_NW_003315915v1_alt +chr4_NW_013171799v1_alt 0 90922 KQ090013.1 NW_013171799.1 chr4_NW_013171799v1_alt +chr4_NW_013171800v1_alt 0 163749 KQ090014.1 NW_013171800.1 chr4_NW_013171800v1_alt +chr4_NW_013171801v1_alt 0 236512 KQ090015.1 NW_013171801.1 chr4_NW_013171801v1_alt +chr4_NW_015495300v1_alt 0 230434 KQ983257.1 NW_015495300.1 chr4_NW_015495300v1_alt +chr4_NW_015495301v1_alt 0 205407 KQ983258.1 NW_015495301.1 chr4_NW_015495301v1_alt +chr4_NW_017363814v1_alt 0 420675 KV766193.1 NW_017363814.1 chr4_NW_017363814v1_alt +chr4_NW_021159990v1_alt 0 235734 ML143344.1 NW_021159990.1 chr4_NW_021159990v1_alt +chr4_NW_021159991v1_alt 0 341066 ML143345.1 NW_021159991.1 chr4_NW_021159991v1_alt +chr4_NW_021159992v1_alt 0 53476 ML143346.1 NW_021159992.1 chr4_NW_021159992v1_alt +chr4_NW_021159993v1_alt 0 176674 ML143347.1 NW_021159993.1 chr4_NW_021159993v1_alt +chr4_NW_021159994v1_alt 0 125549 ML143348.1 NW_021159994.1 chr4_NW_021159994v1_alt +chr4_NW_021159995v1_alt 0 276109 ML143349.1 NW_021159995.1 chr4_NW_021159995v1_alt +chr5 0 181538259 5 CM000667.2 NC_000005.10 chr5 +chr5_NT_113948v1_random 0 92689 GL000208.1 NT_113948.1 chr5_NT_113948v1_random +chr5_NT_187546v1_alt 0 131892 KI270795.1 NT_187546.1 chr5_NT_187546v1_alt +chr5_NT_187547v1_alt 0 195710 KI270791.1 NT_187547.1 chr5_NT_187547v1_alt +chr5_NT_187548v1_alt 0 179043 KI270792.1 NT_187548.1 chr5_NT_187548v1_alt +chr5_NT_187549v1_alt 0 172708 KI270796.1 NT_187549.1 chr5_NT_187549v1_alt +chr5_NT_187550v1_alt 0 126136 KI270793.1 NT_187550.1 chr5_NT_187550v1_alt +chr5_NT_187551v1_alt 0 164558 KI270794.1 NT_187551.1 chr5_NT_187551v1_alt +chr5_NT_187651v1_alt 0 1144418 KI270897.1 NT_187651.1 chr5_NT_187651v1_alt +chr5_NT_187652v1_alt 0 130957 KI270898.1 NT_187652.1 chr5_NT_187652v1_alt +chr5_NW_003315917v2_alt 0 1612928 GL339449.2 NW_003315917.2 chr5_NW_003315917v2_alt +chr5_NW_003315918v1_alt 0 101241 GL383530.1 NW_003315918.1 chr5_NW_003315918v1_alt +chr5_NW_003315919v1_alt 0 173459 GL383531.1 NW_003315919.1 chr5_NW_003315919v1_alt +chr5_NW_003315920v1_alt 0 82728 GL383532.1 NW_003315920.1 chr5_NW_003315920v1_alt +chr5_NW_003571036v1_alt 0 226852 GL949742.1 NW_003571036.1 chr5_NW_003571036v1_alt +chr5_NW_009646199v1_alt 0 139087 KN196477.1 NW_009646199.1 chr5_NW_009646199v1_alt +chr5_NW_016107297v1_alt 0 362221 KV575243.1 NW_016107297.1 chr5_NW_016107297v1_alt +chr5_NW_016107298v1_alt 0 673059 KV575244.1 NW_016107298.1 chr5_NW_016107298v1_alt +chr5_NW_018654712v1_alt 0 135987 KZ208910.1 NW_018654712.1 chr5_NW_018654712v1_alt +chr5_NW_021159996v1_alt 0 89956 ML143350.1 NW_021159996.1 chr5_NW_021159996v1_alt +chr6 0 170805979 6 CM000668.2 NC_000006.12 chr6 +chr6_NT_113891v3_alt 0 4795265 GL000251.2 NT_113891.3 chr6_NT_113891v3_alt +chr6_NT_167244v2_alt 0 4672374 GL000250.2 NT_167244.2 chr6_NT_167244v2_alt +chr6_NT_167245v2_alt 0 4604811 GL000252.2 NT_167245.2 chr6_NT_167245v2_alt +chr6_NT_167246v2_alt 0 4677643 GL000253.2 NT_167246.2 chr6_NT_167246v2_alt +chr6_NT_167247v2_alt 0 4827813 GL000254.2 NT_167247.2 chr6_NT_167247v2_alt +chr6_NT_167248v2_alt 0 4606388 GL000255.2 NT_167248.2 chr6_NT_167248v2_alt +chr6_NT_167249v2_alt 0 4929269 GL000256.2 NT_167249.2 chr6_NT_167249v2_alt +chr6_NT_187552v1_alt 0 197536 KI270797.1 NT_187552.1 chr6_NT_187552v1_alt +chr6_NT_187553v1_alt 0 271782 KI270798.1 NT_187553.1 chr6_NT_187553v1_alt +chr6_NT_187554v1_alt 0 152148 KI270799.1 NT_187554.1 chr6_NT_187554v1_alt +chr6_NT_187555v1_alt 0 175808 KI270800.1 NT_187555.1 chr6_NT_187555v1_alt +chr6_NT_187556v1_alt 0 870480 KI270801.1 NT_187556.1 chr6_NT_187556v1_alt +chr6_NT_187557v1_alt 0 75005 KI270802.1 NT_187557.1 chr6_NT_187557v1_alt +chr6_NT_187692v1_alt 0 76752 KI270758.1 NT_187692.1 chr6_NT_187692v1_alt +chr6_NW_003315921v1_alt 0 124736 GL383533.1 NW_003315921.1 chr6_NW_003315921v1_alt +chr6_NW_004166862v2_alt 0 185823 KB021644.2 NW_004166862.2 chr6_NW_004166862v2_alt +chr6_NW_009646200v1_alt 0 268330 KN196478.1 NW_009646200.1 chr6_NW_009646200v1_alt +chr6_NW_012132918v1_alt 0 320750 KQ031387.1 NW_012132918.1 chr6_NW_012132918v1_alt +chr6_NW_013171802v1_alt 0 245716 KQ090016.1 NW_013171802.1 chr6_NW_013171802v1_alt +chr6_NW_013171803v1_alt 0 82315 KQ090017.1 NW_013171803.1 chr6_NW_013171803v1_alt +chr6_NW_017363815v1_alt 0 139427 KV766194.1 NW_017363815.1 chr6_NW_017363815v1_alt +chr6_NW_018654713v1_alt 0 242796 KZ208911.1 NW_018654713.1 chr6_NW_018654713v1_alt +chr6_NW_021159997v1_alt 0 73265 ML143351.1 NW_021159997.1 chr6_NW_021159997v1_alt +chr7 0 159345973 7 CM000669.2 NC_000007.14 chr7 +chr7_NT_187558v1_alt 0 157952 KI270804.1 NT_187558.1 chr7_NT_187558v1_alt +chr7_NT_187559v1_alt 0 158166 KI270806.1 NT_187559.1 chr7_NT_187559v1_alt +chr7_NT_187560v1_alt 0 209988 KI270805.1 NT_187560.1 chr7_NT_187560v1_alt +chr7_NT_187561v1_alt 0 209586 KI270809.1 NT_187561.1 chr7_NT_187561v1_alt +chr7_NT_187562v1_alt 0 1111570 KI270803.1 NT_187562.1 chr7_NT_187562v1_alt +chr7_NT_187563v1_alt 0 126434 KI270807.1 NT_187563.1 chr7_NT_187563v1_alt +chr7_NT_187564v1_alt 0 271455 KI270808.1 NT_187564.1 chr7_NT_187564v1_alt +chr7_NT_187653v1_alt 0 190869 KI270899.1 NT_187653.1 chr7_NT_187653v1_alt +chr7_NW_003315922v2_alt 0 119183 GL383534.2 NW_003315922.2 chr7_NW_003315922v2_alt +chr7_NW_012132919v1_alt 0 179932 KQ031388.1 NW_012132919.1 chr7_NW_012132919v1_alt +chr7_NW_017852929v1_alt 0 142129 KV880764.1 NW_017852929.1 chr7_NW_017852929v1_alt +chr7_NW_017852930v1_alt 0 468267 KV880765.1 NW_017852930.1 chr7_NW_017852930v1_alt +chr7_NW_018654714v1_alt 0 589656 KZ208912.1 NW_018654714.1 chr7_NW_018654714v1_alt +chr7_NW_018654715v1_alt 0 680662 KZ208913.1 NW_018654715.1 chr7_NW_018654715v1_alt +chr7_NW_019805493v1_alt 0 172555 KZ559106.1 NW_019805493.1 chr7_NW_019805493v1_alt +chr7_NW_021159998v1_alt 0 254759 ML143352.1 NW_021159998.1 chr7_NW_021159998v1_alt +chr8 0 145138636 8 CM000670.2 NC_000008.11 chr8 +chr8_NT_187565v1_alt 0 292436 KI270811.1 NT_187565.1 chr8_NT_187565v1_alt +chr8_NT_187566v1_alt 0 141812 KI270814.1 NT_187566.1 chr8_NT_187566v1_alt +chr8_NT_187567v1_alt 0 374415 KI270810.1 NT_187567.1 chr8_NT_187567v1_alt +chr8_NT_187568v1_alt 0 282736 KI270812.1 NT_187568.1 chr8_NT_187568v1_alt +chr8_NT_187569v1_alt 0 132244 KI270815.1 NT_187569.1 chr8_NT_187569v1_alt +chr8_NT_187570v1_alt 0 300230 KI270813.1 NT_187570.1 chr8_NT_187570v1_alt +chr8_NT_187571v1_alt 0 305841 KI270816.1 NT_187571.1 chr8_NT_187571v1_alt +chr8_NT_187572v1_alt 0 145606 KI270818.1 NT_187572.1 chr8_NT_187572v1_alt +chr8_NT_187573v1_alt 0 158983 KI270817.1 NT_187573.1 chr8_NT_187573v1_alt +chr8_NT_187574v1_alt 0 133535 KI270819.1 NT_187574.1 chr8_NT_187574v1_alt +chr8_NT_187575v1_alt 0 36640 KI270820.1 NT_187575.1 chr8_NT_187575v1_alt +chr8_NT_187576v1_alt 0 985506 KI270821.1 NT_187576.1 chr8_NT_187576v1_alt +chr8_NT_187577v1_alt 0 624492 KI270822.1 NT_187577.1 chr8_NT_187577v1_alt +chr8_NT_187654v1_alt 0 318687 KI270900.1 NT_187654.1 chr8_NT_187654v1_alt +chr8_NT_187655v1_alt 0 136959 KI270901.1 NT_187655.1 chr8_NT_187655v1_alt +chr8_NT_187680v1_alt 0 229282 KI270926.1 NT_187680.1 chr8_NT_187680v1_alt +chr8_NW_017852931v1_alt 0 156998 KV880766.1 NW_017852931.1 chr8_NW_017852931v1_alt +chr8_NW_017852932v1_alt 0 265876 KV880767.1 NW_017852932.1 chr8_NW_017852932v1_alt +chr8_NW_018654716v1_alt 0 165120 KZ208914.1 NW_018654716.1 chr8_NW_018654716v1_alt +chr8_NW_018654717v1_alt 0 6367528 KZ208915.1 NW_018654717.1 chr8_NW_018654717v1_alt +chr8_NW_019805494v1_alt 0 103072 KZ559107.1 NW_019805494.1 chr8_NW_019805494v1_alt +chr9 0 138394717 9 CM000671.2 NC_000009.12 chr9 +chr9_NT_187372v1_random 0 40062 KI270717.1 NT_187372.1 chr9_NT_187372v1_random +chr9_NT_187373v1_random 0 38054 KI270718.1 NT_187373.1 chr9_NT_187373v1_random +chr9_NT_187374v1_random 0 176845 KI270719.1 NT_187374.1 chr9_NT_187374v1_random +chr9_NT_187375v1_random 0 39050 KI270720.1 NT_187375.1 chr9_NT_187375v1_random +chr9_NT_187578v1_alt 0 439082 KI270823.1 NT_187578.1 chr9_NT_187578v1_alt +chr9_NW_003315928v1_alt 0 162988 GL383539.1 NW_003315928.1 chr9_NW_003315928v1_alt +chr9_NW_003315929v1_alt 0 71551 GL383540.1 NW_003315929.1 chr9_NW_003315929v1_alt +chr9_NW_003315930v1_alt 0 171286 GL383541.1 NW_003315930.1 chr9_NW_003315930v1_alt +chr9_NW_003315931v1_alt 0 60032 GL383542.1 NW_003315931.1 chr9_NW_003315931v1_alt +chr9_NW_009646201v1_alt 0 330164 KN196479.1 NW_009646201.1 chr9_NW_009646201v1_alt +chr9_NW_013171804v1_alt 0 163882 KQ090018.1 NW_013171804.1 chr9_NW_013171804v1_alt +chr9_NW_013171805v1_alt 0 134099 KQ090019.1 NW_013171805.1 chr9_NW_013171805v1_alt +chr9_NW_021159999v1_alt 0 25408 ML143353.1 NW_021159999.1 chr9_NW_021159999v1_alt +chrM 0 16569 J01415.2 MT NC_012920.1 chrM +chrUn_NT_113889v1 0 161147 GL000218.1 NT_113889.1 chrUn_NT_113889v1 +chrUn_NT_113901v1 0 182896 GL000195.1 NT_113901.1 chrUn_NT_113901v1 +chrUn_NT_167208v1 0 164239 GL000213.1 NT_167208.1 chrUn_NT_167208v1 +chrUn_NT_167209v1 0 137718 GL000214.1 NT_167209.1 chrUn_NT_167209v1 +chrUn_NT_167211v2 0 176608 GL000216.2 NT_167211.2 chrUn_NT_167211v2 +chrUn_NT_167213v1 0 179198 GL000219.1 NT_167213.1 chrUn_NT_167213v1 +chrUn_NT_167214v1 0 161802 GL000220.1 NT_167214.1 chrUn_NT_167214v1 +chrUn_NT_167218v1 0 179693 GL000224.1 NT_167218.1 chrUn_NT_167218v1 +chrUn_NT_167220v1 0 15008 GL000226.1 NT_167220.1 chrUn_NT_167220v1 +chrUn_NT_187396v1 0 2274 KI270302.1 NT_187396.1 chrUn_NT_187396v1 +chrUn_NT_187397v1 0 2165 KI270304.1 NT_187397.1 chrUn_NT_187397v1 +chrUn_NT_187398v1 0 1942 KI270303.1 NT_187398.1 chrUn_NT_187398v1 +chrUn_NT_187399v1 0 1472 KI270305.1 NT_187399.1 chrUn_NT_187399v1 +chrUn_NT_187400v1 0 21476 KI270322.1 NT_187400.1 chrUn_NT_187400v1 +chrUn_NT_187401v1 0 4416 KI270320.1 NT_187401.1 chrUn_NT_187401v1 +chrUn_NT_187402v1 0 1201 KI270310.1 NT_187402.1 chrUn_NT_187402v1 +chrUn_NT_187403v1 0 1444 KI270316.1 NT_187403.1 chrUn_NT_187403v1 +chrUn_NT_187404v1 0 2276 KI270315.1 NT_187404.1 chrUn_NT_187404v1 +chrUn_NT_187405v1 0 998 KI270312.1 NT_187405.1 chrUn_NT_187405v1 +chrUn_NT_187406v1 0 12399 KI270311.1 NT_187406.1 chrUn_NT_187406v1 +chrUn_NT_187407v1 0 37690 KI270317.1 NT_187407.1 chrUn_NT_187407v1 +chrUn_NT_187408v1 0 1179 KI270412.1 NT_187408.1 chrUn_NT_187408v1 +chrUn_NT_187409v1 0 2646 KI270411.1 NT_187409.1 chrUn_NT_187409v1 +chrUn_NT_187410v1 0 2489 KI270414.1 NT_187410.1 chrUn_NT_187410v1 +chrUn_NT_187411v1 0 1029 KI270419.1 NT_187411.1 chrUn_NT_187411v1 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chrUn_NT_187426v1 +chrUn_NT_187427v1 0 2415 KI270510.1 NT_187427.1 chrUn_NT_187427v1 +chrUn_NT_187428v1 0 2318 KI270509.1 NT_187428.1 chrUn_NT_187428v1 +chrUn_NT_187429v1 0 2186 KI270518.1 NT_187429.1 chrUn_NT_187429v1 +chrUn_NT_187430v1 0 1951 KI270508.1 NT_187430.1 chrUn_NT_187430v1 +chrUn_NT_187431v1 0 1300 KI270516.1 NT_187431.1 chrUn_NT_187431v1 +chrUn_NT_187432v1 0 22689 KI270512.1 NT_187432.1 chrUn_NT_187432v1 +chrUn_NT_187433v1 0 138126 KI270519.1 NT_187433.1 chrUn_NT_187433v1 +chrUn_NT_187434v1 0 5674 KI270522.1 NT_187434.1 chrUn_NT_187434v1 +chrUn_NT_187435v1 0 8127 KI270511.1 NT_187435.1 chrUn_NT_187435v1 +chrUn_NT_187436v1 0 6361 KI270515.1 NT_187436.1 chrUn_NT_187436v1 +chrUn_NT_187437v1 0 5353 KI270507.1 NT_187437.1 chrUn_NT_187437v1 +chrUn_NT_187438v1 0 3253 KI270517.1 NT_187438.1 chrUn_NT_187438v1 +chrUn_NT_187439v1 0 1899 KI270529.1 NT_187439.1 chrUn_NT_187439v1 +chrUn_NT_187440v1 0 2983 KI270528.1 NT_187440.1 chrUn_NT_187440v1 +chrUn_NT_187441v1 0 2168 KI270530.1 NT_187441.1 chrUn_NT_187441v1 +chrUn_NT_187442v1 0 993 KI270539.1 NT_187442.1 chrUn_NT_187442v1 +chrUn_NT_187443v1 0 91309 KI270538.1 NT_187443.1 chrUn_NT_187443v1 +chrUn_NT_187444v1 0 1202 KI270544.1 NT_187444.1 chrUn_NT_187444v1 +chrUn_NT_187445v1 0 1599 KI270548.1 NT_187445.1 chrUn_NT_187445v1 +chrUn_NT_187446v1 0 1400 KI270583.1 NT_187446.1 chrUn_NT_187446v1 +chrUn_NT_187447v1 0 2969 KI270587.1 NT_187447.1 chrUn_NT_187447v1 +chrUn_NT_187448v1 0 1553 KI270580.1 NT_187448.1 chrUn_NT_187448v1 +chrUn_NT_187449v1 0 7046 KI270581.1 NT_187449.1 chrUn_NT_187449v1 +chrUn_NT_187450v1 0 31033 KI270579.1 NT_187450.1 chrUn_NT_187450v1 +chrUn_NT_187451v1 0 44474 KI270589.1 NT_187451.1 chrUn_NT_187451v1 +chrUn_NT_187452v1 0 4685 KI270590.1 NT_187452.1 chrUn_NT_187452v1 +chrUn_NT_187453v1 0 4513 KI270584.1 NT_187453.1 chrUn_NT_187453v1 +chrUn_NT_187454v1 0 6504 KI270582.1 NT_187454.1 chrUn_NT_187454v1 +chrUn_NT_187455v1 0 6158 KI270588.1 NT_187455.1 chrUn_NT_187455v1 +chrUn_NT_187456v1 0 3041 KI270593.1 NT_187456.1 chrUn_NT_187456v1 +chrUn_NT_187457v1 0 5796 KI270591.1 NT_187457.1 chrUn_NT_187457v1 +chrUn_NT_187458v1 0 1652 KI270330.1 NT_187458.1 chrUn_NT_187458v1 +chrUn_NT_187459v1 0 1040 KI270329.1 NT_187459.1 chrUn_NT_187459v1 +chrUn_NT_187460v1 0 1368 KI270334.1 NT_187460.1 chrUn_NT_187460v1 +chrUn_NT_187461v1 0 2699 KI270333.1 NT_187461.1 chrUn_NT_187461v1 +chrUn_NT_187462v1 0 1048 KI270335.1 NT_187462.1 chrUn_NT_187462v1 +chrUn_NT_187463v1 0 1428 KI270338.1 NT_187463.1 chrUn_NT_187463v1 +chrUn_NT_187464v1 0 1428 KI270340.1 NT_187464.1 chrUn_NT_187464v1 +chrUn_NT_187465v1 0 1026 KI270336.1 NT_187465.1 chrUn_NT_187465v1 +chrUn_NT_187466v1 0 1121 KI270337.1 NT_187466.1 chrUn_NT_187466v1 +chrUn_NT_187467v1 0 1803 KI270363.1 NT_187467.1 chrUn_NT_187467v1 +chrUn_NT_187468v1 0 2855 KI270364.1 NT_187468.1 chrUn_NT_187468v1 +chrUn_NT_187469v1 0 3530 KI270362.1 NT_187469.1 chrUn_NT_187469v1 +chrUn_NT_187470v1 0 8320 KI270366.1 NT_187470.1 chrUn_NT_187470v1 +chrUn_NT_187471v1 0 1048 KI270378.1 NT_187471.1 chrUn_NT_187471v1 +chrUn_NT_187472v1 0 1045 KI270379.1 NT_187472.1 chrUn_NT_187472v1 +chrUn_NT_187473v1 0 1298 KI270389.1 NT_187473.1 chrUn_NT_187473v1 +chrUn_NT_187474v1 0 2387 KI270390.1 NT_187474.1 chrUn_NT_187474v1 +chrUn_NT_187475v1 0 1537 KI270387.1 NT_187475.1 chrUn_NT_187475v1 +chrUn_NT_187476v1 0 1143 KI270395.1 NT_187476.1 chrUn_NT_187476v1 +chrUn_NT_187477v1 0 1880 KI270396.1 NT_187477.1 chrUn_NT_187477v1 +chrUn_NT_187478v1 0 1216 KI270388.1 NT_187478.1 chrUn_NT_187478v1 +chrUn_NT_187479v1 0 970 KI270394.1 NT_187479.1 chrUn_NT_187479v1 +chrUn_NT_187480v1 0 1788 KI270386.1 NT_187480.1 chrUn_NT_187480v1 +chrUn_NT_187481v1 0 1484 KI270391.1 NT_187481.1 chrUn_NT_187481v1 +chrUn_NT_187482v1 0 1750 KI270383.1 NT_187482.1 chrUn_NT_187482v1 +chrUn_NT_187483v1 0 1308 KI270393.1 NT_187483.1 chrUn_NT_187483v1 +chrUn_NT_187484v1 0 1658 KI270384.1 NT_187484.1 chrUn_NT_187484v1 +chrUn_NT_187485v1 0 971 KI270392.1 NT_187485.1 chrUn_NT_187485v1 +chrUn_NT_187486v1 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chrX_NT_187635v1_alt +chrX_NT_187667v1_alt 0 274009 KI270913.1 NT_187667.1 chrX_NT_187667v1_alt +chrX_NW_017363820v1_alt 0 188004 KV766199.1 NW_017363820.1 chrX_NW_017363820v1_alt +chrX_NW_021160027v1_alt 0 403128 ML143381.1 NW_021160027.1 chrX_NW_021160027v1_alt +chrX_NW_021160028v1_alt 0 28824 ML143382.1 NW_021160028.1 chrX_NW_021160028v1_alt +chrX_NW_021160029v1_alt 0 68192 ML143383.1 NW_021160029.1 chrX_NW_021160029v1_alt +chrX_NW_021160030v1_alt 0 14678 ML143384.1 NW_021160030.1 chrX_NW_021160030v1_alt +chrX_NW_021160031v1_alt 0 17435 ML143385.1 NW_021160031.1 chrX_NW_021160031v1_alt +chrY 0 57227415 CM000686.2 NC_000024.10 Y chrY +chrY_NT_187395v1_random 0 37240 KI270740.1 NT_187395.1 chrY_NT_187395v1_random +chrY_NW_009646209v1_alt 0 101150 KN196487.1 NW_009646209.1 chrY_NW_009646209v1_alt +chrY_NW_018654725v1_alt 0 48370 KZ208923.1 NW_018654725.1 chrY_NW_018654725v1_alt +chrY_NW_018654726v1_alt 0 209722 KZ208924.1 NW_018654726.1 chrY_NW_018654726v1_alt