8fdef9e866ecc228bfe4ea54102d0079818f0366
braney
  Fri Apr 8 14:49:38 2022 -0700
let bedGraphToBigWig use chromAlias.bb as chromSizes file.  Add tests
to both bedGraphToBigWig and bedToBigBed

diff --git src/utils/bedToBigBed/tests/input/chromAliasIndex.as src/utils/bedToBigBed/tests/input/chromAliasIndex.as
new file mode 100644
index 0000000..629613e
--- /dev/null
+++ src/utils/bedToBigBed/tests/input/chromAliasIndex.as
@@ -0,0 +1,12 @@
+
+table chromAliasIndex
+"chromAlias bigBed Index"
+    (
+    string chrom;	"Reference sequence chromosome or scaffold col1"
+    uint chromStart;	"pseudogene alignment start position col2"
+    uint chromEnd;      "pseudogene alignment end position col3"
+    string ensembl;    "Ensembl Name"
+    string genbank;    "Genbank Name"
+    string ncbi;    "NCBI Name"
+    string ucsc;    "UCSC Name"
+    )