658fb300956f1b2c395ffee56abfaf4bc8cfbafc hiram Fri Apr 8 11:18:29 2022 -0700 fixup ftp reference to be https for ftp.ncbi.nlm.nih.gov refs #29203 diff --git src/hg/utils/automation/asmHubGatewayPage.pl src/hg/utils/automation/asmHubGatewayPage.pl index f27e55d..40ff976 100755 --- src/hg/utils/automation/asmHubGatewayPage.pl +++ src/hg/utils/automation/asmHubGatewayPage.pl @@ -308,31 +308,31 @@ } my $sciNameUnderscore = $orgName; $sciNameUnderscore =~ s/ /_/g; $sciNameUnderscore = "Strigops_habroptilus" if ($orgName =~ m/Strigops habroptila/); printf "<p> <b>Common name:</b> %s<br> <b>Taxonomic name: %s, taxonomy ID:</b> <a href='https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=%s' target='_blank'> %s</a><br> <b>Sequencing/Assembly provider ID:</b> %s<br> <b>Assembly date:</b> %s<br> <b>Assembly type:</b> %s<br> <b>Assembly level:</b> %s<br> <b>Biosample:</b> <a href=\"https://www.ncbi.nlm.nih.gov/biosample/?term=%s\" target=\"_blank\">%s</a><br> <b>Assembly accession ID:</b> <a href=\"https://www.ncbi.nlm.nih.gov/assembly/%s\" target=\"_blank\">%s</a><br> -<b>Assembly FTP location:</b> <a href='ftp://ftp.ncbi.nlm.nih.gov/genomes/all/%s' target='_blank'>%s</a><br> +<b>Assembly FTP location:</b> <a href='https://ftp.ncbi.nlm.nih.gov/genomes/all/%s' target='_blank'>%s</a><br> \n", $commonName, $orgName, $taxId, $taxId, $submitter, $asmDate, $descrAsmType, $asmLevel, $bioSample, $bioSample, $asmAccession, $asmAccession, $newStyleUrl, $newStyleUrl; chromSizes($chromSizes); printf "</p>\n<hr> <h4>Data file downloads</h4> <p> <ul> <li><a href='https://$sourceServer/hubs/$localDataUrl/$asmAccession.fa.gz' target=_blank>$asmAccession.fa.gz</a> fasta sequence with NCBI GenBank sequence names</li> <li><a href='https://$sourceServer/hubs/$localDataUrl/$asmAccession.2bit' target=_blank>$asmAccession.2bit</a> UCSC 2bit sequence file with NCBI GenBank sequence names</li> <li><a href='https://$sourceServer/hubs/$localDataUrl/$asmAccession.chromAlias.txt' target=_blank>$asmAccession.chromAlias.txt</a> chromAlias file to relate chromosome names</li> "; if ( -s "$buildDir/$asmId.chrNames.fa.gz") {