ffc35dfe6450ecbbd108eec4ec0c711b335f8c61 max Mon Mar 28 12:26:44 2022 -0700 adding jarvis makedoc, refs #29154 diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt index 4d1954e..c55544d 100644 --- src/hg/makeDb/doc/hg19.txt +++ src/hg/makeDb/doc/hg19.txt @@ -34749,15 +34749,25 @@ cd panelApp ln -s /hive/data/genomes/hg19/bed/panelApp/genesPanel.bb ln -s /hive/data/genomes/hg19/bed/panelApp/STRsPanel.bb cd ~/kent/src/hg/makeDb/trackDb/human/hg19 wget https://hgwdev.gi.ucsc.edu/~bnguy/panel/hg19/panelapp.html cd ~/kent/src/hg/makeDb/trackDb mv human/hg19/panelapp.html human/hg19/panelApp.html curl https://hgwdev.gi.ucsc.edu/~bnguy/panel/hg19/trackDb.txt >> trackDb.ra vi trackDb.ra make alpha DBS=hg19 ############################################### #Probe and Microarray data sets addition 3/11/21 +############################################### +# Jarvis, Max, 03/28/22 +cd /hive/data/genomes/hg19/bed/jarvis +# downloaded from https://az.app.box.com/v/jarvis-gwrvis-scores/folder/146728772904 by Luis into orig/ +cd orig +zcat `ls | sort | grep bed` > ../jarvis.bed +bedGraphToBigWig jarvis.bed ../chrom.sizes jarvis.bw +# Go to Brian's cube, push "that was easy" button + +