a8ca414c875d55dc33be9da0bb08293351b3cbc4
max
  Tue Apr 5 06:05:10 2022 -0700
adding gnomad mutation constraints track, refs #29206

diff --git src/hg/makeDb/doc/hg38/gnomad.txt src/hg/makeDb/doc/hg38/gnomad.txt
index fd347c5..1146c5e 100644
--- src/hg/makeDb/doc/hg38/gnomad.txt
+++ src/hg/makeDb/doc/hg38/gnomad.txt
@@ -201,15 +201,23 @@
 # bedJoinTabOffset to combine them together:
 time bgzip -iI gnomad.v3.1.1.details.tab.gz.gzi -c gnomad.v3.1.1.details.pre.tab > gnomad.v3.1.1.details.tab.gz &
 # real  255m53.801s
 # user    238m3.982s
 # sys 16m7.130s
 time (ls -1S hg38/genomes/chr*.bed |
     parallel --joblog join.run.log --max-procs 12 \\
         bedJoinTabOffset -verbose=2 -bedKey=3 gnomad.v3.1.1.details.pre.tab {} joined/{/}) &> bedJoinTabOffset.log &
 time sort --merge joined/*.bed | grep -v "^#" > gnomad.v3.1.1.genomes.joined.bed
 # real    16m4.876s
 # user    12m2.699s
 # sys 6m30.244s
 
 # and lastly turn the merged bed into a bigBed:
 time (bedToBigBed -type=bed9+15 -tab -as=genomes.as -extraIndex=name,rsId,_displayName gnomad.v3.1.1.genomes.joined.bed /hive/data/genomes/hg38/chrom.sizes genomes.bb) &> bigBed.log &
+
+# Max Tue Apr  5 04:14:40 PDT 2022 - adding mutation constraint subtrack
+cd /hive/data/genomes/hg38/bed/gnomad/constraint
+# Downloaded BED file from https://www.biorxiv.org/content/10.1101/2022.03.20.485034v1.supplementary-material
+bedGraphToBigWig *.bed ../../../chrom.sizes mutConstraint.bw
+
+
+bedGraphToBigWig *.bed ../../../chrom.sizes mutConstraint.bw