6b1648806fc1de0da4b16bb23f51e0fd52065ef7 gperez2 Wed Apr 13 13:12:33 2022 -0700 making ReMap hub into native track, refs #28960 diff --git src/hg/makeDb/doc/dm6.txt src/hg/makeDb/doc/dm6.txt index f04ebd8..9e5655e 100644 --- src/hg/makeDb/doc/dm6.txt +++ src/hg/makeDb/doc/dm6.txt @@ -3821,15 +3821,37 @@ -syntenicNet) > swap.log 2>&1 & # real 4m32.910s cat fb.droSim2.chainDm6Link.txt # 115776543 bases of 124963774 (92.648%) in intersection cat fb.droSim2.chainSynDm6Link.txt # 108004181 bases of 124963774 (86.428%) in intersection time (doRecipBest.pl -load -workhorse=hgwdev -buildDir=`pwd` droSim2 dm6) > rbest.log 2>&1 & # real 7m22.120s cat fb.droSim2.chainRBest.Dm6.txt # 110784245 bases of 124963774 (88.653%) in intersection ########################################################################### + +# ReMap refs #28960 (2022-04-13 Gerardo) +cd /hive/data/genomes/dm6/bed +mkdir reMap +cd reMap +wget https://remap.univ-amu.fr/storage/public/hubReMap2022/dm6/bigBed/remap2022_all_macs2_dm6_v1_0.bb +mv remap2022_all_macs2_dm6_v1_0.bb reMap2022.bb +wget https://remap.univ-amu.fr/storage/public/hubReMap2022/dm6/bigBed/dm6.bw +mv dm6.bw reMapDensity2022.bw +cd /gbdb/dm6 +mkdir reMap +cd reMap +ln -s /hive/data/genomes/dm6/bed/reMap/reMap2022.bb +ln -s /hive/data/genomes/dm6/bed/reMap/reMapDensity2022.bw +cd ~/kent/src/hg/makeDb/trackDb/drosophila/dm6/ +wget https://remap.univ-amu.fr/storage/public/hubReMap2022/remapHub2022.html +cp remapHub2022.html reMap.html +cd ~/kent/src/hg/makeDb/trackDb +curl https://remap.univ-amu.fr/storage/public/hubReMap2022/dm6/trackDb.txt > drosophila/dm6/reMap.ra +vi drosophila/dm6/reMap.ra +vi drosophila/dm6/trackDb.ra +vi drosophila/dm6/reMap.html