6b1648806fc1de0da4b16bb23f51e0fd52065ef7 gperez2 Wed Apr 13 13:12:33 2022 -0700 making ReMap hub into native track, refs #28960 diff --git src/hg/makeDb/doc/hg38/reMap.txt src/hg/makeDb/doc/hg38/reMap.txt new file mode 100644 index 0000000..5070209 --- /dev/null +++ src/hg/makeDb/doc/hg38/reMap.txt @@ -0,0 +1,21 @@ +# ReMap refs #28960 (2022-04-13 Gerardo) +cd /hive/data/genomes/hg38/bed +mkdir reMap +cd reMap +wget https://remap.univ-amu.fr/storage/public/hubReMap2022/hg38/bigBed/remap2022_all_macs2_hg38_v1_0.bb +mv remap2022_all_macs2_hg38_v1_0.bb reMap2022.bb +wget https://remap.univ-amu.fr/storage/public/hubReMap2022/hg38/bigBed/hg38.bw +mv hg38.bw reMapDensity2022.bw +cd /gbdb/hg38 +mkdir reMap +cd reMap +ln -s /hive/data/genomes/hg38/bed/reMap/reMap2022.bb +ln -s /hive/data/genomes/hg38/bed/reMap/reMapDensity2022.bw +cd ~/kent/src/hg/makeDb/trackDb/human/ +wget https://remap.univ-amu.fr/storage/public/hubReMap2022/remapHub2022.html +cp remapHub2022.html reMap.html +cd ~/kent/src/hg/makeDb/trackDb +curl https://remap.univ-amu.fr/storage/public/hubReMap2022/hg38/trackDb.txt > human/hg38/reMap.ra +vi human/hg38/reMap.ra +vi human/hg38/trackDb.ra +vi human/reMap.html