b1cabf573dc930b78de2f4e5a369c68f7655d9ba
hiram
  Mon Apr 11 15:36:26 2022 -0700
initial set of files for chm13v2.0 hub construction refs #29203

diff --git src/hg/makeDb/doc/chm13v2.0/makefile src/hg/makeDb/doc/chm13v2.0/makefile
new file mode 100644
index 0000000..865f669
--- /dev/null
+++ src/hg/makeDb/doc/chm13v2.0/makefile
@@ -0,0 +1,51 @@
+
+# default set of hub track html description files
+
+htmlFiles = html/GCA_009914755.4_T2T-CHM13v2.0.assembly.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.chainNet.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.cpgIslands.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.description.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.gc5Base.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.repeatMasker.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.simpleRepeat.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.windowMasker.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.xenoRefGene.html
+
+# these html files come from the T2T porting project, not maintained here
+outsideSource = GCA_009914755.4_T2T-CHM13v2.0.catLiftOffGenes.html \
+GCA_009914755.4_T2T-CHM13v2.0.catLiftOffGenesV1.html \
+GCA_009914755.4_T2T-CHM13v2.0.censat.html \
+GCA_009914755.4_T2T-CHM13v2.0.clinVar20220313.html \
+GCA_009914755.4_T2T-CHM13v2.0.dbSNP155.html \
+GCA_009914755.4_T2T-CHM13v2.0.gwasSNPs2022-03-08.html \
+GCA_009914755.4_T2T-CHM13v2.0.hgCactus.html \
+GCA_009914755.4_T2T-CHM13v2.0.hgLiftOver.html \
+GCA_009914755.4_T2T-CHM13v2.0.hgUnique.html \
+GCA_009914755.4_T2T-CHM13v2.0.proseq.html \
+GCA_009914755.4_T2T-CHM13v2.0.rdnaModel.html \
+GCA_009914755.4_T2T-CHM13v2.0.rnaseq.html \
+GCA_009914755.4_T2T-CHM13v2.0.sedefSegDups.html
+
+# tracks not used, and userTrackDb comes from T2T porting project
+
+notPushed = html/GCA_009914755.4_T2T-CHM13v2.0.augustus.html \
+html/GCA_009914755.4_T2T-CHM13v2.0.tanDups.html \
+trackDb/GCA_009914755.4_T2T-CHM13v2.0.userTrackDb.txt
+
+# files used to construct a useOneFile hub.txt
+hubTxt = hub/GCA_009914755.4_T2T-CHM13v2.0.hub.txt \
+hub/GCA_009914755.4_T2T-CHM13v2.0.genomes.txt \
+trackDb/GCA_009914755.4_T2T-CHM13v2.0.trackDb.txt
+
+singleFileHub: ${hubTxt}
+	@rm -f hub.txt
+	@grep -v genomesFile hub/GCA_009914755.4_T2T-CHM13v2.0.hub.txt > hub.txt
+	@printf "useOneFile on\n\n" >> hub.txt
+	@grep -v trackDb hub/GCA_009914755.4_T2T-CHM13v2.0.genomes.txt >> hub.txt
+	@echo >> hub.txt
+	@cat trackDb/GCA_009914755.4_T2T-CHM13v2.0.trackDb.txt >> hub.txt
+
+alpha: singleFileHub
+
+clean::
+	rm -f hub.txt