89ca2e866a3cdf949b93936a84eda90f9d798c80 hiram Wed Apr 13 15:20:52 2022 -0700 reset track default visibilities refs #29259 diff --git src/hg/makeDb/doc/chm13v2.0userData/makefile src/hg/makeDb/doc/chm13v2.0userData/makefile index 990c118..582122f 100644 --- src/hg/makeDb/doc/chm13v2.0userData/makefile +++ src/hg/makeDb/doc/chm13v2.0userData/makefile @@ -22,31 +22,30 @@ censat hgUnique clinVar20220313 gwasSNPs2022-03-08 dbSNP155 # snakes needs chromAlias fix: # hgCactus tracksWithHtml = $(filter-out cytoBandMapped,${tracks}) hgLiftOverFiles = chm13v2-hg19.over.chain.gz chm13v2-hg38.over.chain.gz hg19-chm13v2.over.chain.gz hg38-chm13v2.over.chain.gz catGxfFiles = catLiftOffGenesV1.gff3.gz catLiftOffGenesV1.gtf.gz .SECONDARY: MAKEFLAGS += --check-symlink-times all: ${userTrackDbFile} bbiInstall htmlInstall liftOverInstall geneInstall - cd ${asmBuildDir} && ./doTrackDb.bash hubCheck ${stageUrl} # ensure spaces separate the stanzas ${userTrackDbFile}: ${tracks:%=trackDb/%.trackDb.txt} awk 'FNR==1{print ""} {print $$0}' $^ > $@ # make bbi links for directories .PHONY: bbiInstall bbiInstall_% bbiInstall: ${tracks:%=${bbiBuildDir}/${asmId}.%} # create symlink if it doesn't exist ${bbiBuildDir}/${asmId}.%: ln -sf ../trackData/$* ${bbiBuildDir}/${asmId}.$* # copy HTML to build and link to the stage dir